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avidaR  

A Computational Biologist’s Toolkit To Get Data From 'avidaDB'
View on CRAN: Click here


Download and install avidaR package within the R console
Install from CRAN:
install.packages("avidaR")

Install from Github:
library("remotes")
install_github("cran/avidaR")

Install by package version:
library("remotes")
install_version("avidaR", "1.2.1")



Attach the package and use:
library("avidaR")
Maintained by
Raúl Ortega
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-04-08
Latest Update: 2022-08-22
Description:
Easy-to-use tools for performing complex queries on 'avidaDB', a semantic database that stores genomic and transcriptomic data of self-replicating computer programs (known as digital organisms) that mutate and evolve within a user-defined computational environment.
How to cite:
Raúl Ortega (2022). avidaR: A Computational Biologist’s Toolkit To Get Data From 'avidaDB'. R package version 1.2.1, https://cran.r-project.org/web/packages/avidaR. Accessed 06 Nov. 2024.
Previous versions and publish date:
1.0.1 (2022-04-08 11:12), 1.1.2 (2022-05-30 10:00), 1.1.3 (2022-08-22 13:50), 1.2.0 (2023-09-14 15:10)
Other packages that cited avidaR R package
View avidaR citation profile
Other R packages that avidaR depends, imports, suggests or enhances
Complete documentation for avidaR
Functions, R codes and Examples using the avidaR R package
Some associated functions: convert_org_into_seq . convert_seq_into_org . get_db_summary . get_docker_image_from_experiment_id . get_doi_from_experiment_id . get_experiment_id_from_organism_id . get_genome_id_from_genome_seq . get_genome_id_from_logic_operation . get_genome_id_from_phenotype_id . get_genome_id_from_transcriptome_id . get_genome_id_of_wild_type_organisms . get_genome_seq_from_genome_id . get_logic_operation_from_phenotype_id . get_mutant_at_pos . get_phenotype_id_from_genome_id . get_phenotype_id_from_genome_seq . get_phenotype_id_from_logic_operation . get_phenotype_id_from_transcriptome_id . get_tandem_id_from_genome_id . get_tandem_id_from_genome_seq . get_tandem_id_from_logic_operation . get_tandem_id_from_phenotype_id . get_tandem_seq_from_tandem_id . get_transcriptome_id_from_genome_id . get_transcriptome_id_from_genome_seq . get_transcriptome_id_from_logic_operation . get_transcriptome_id_from_phenotype_id . get_transcriptome_seq_from_transcriptome_id . instruction_set . logic_operation . plot_transcriptome . triplestore_access . 
Some associated R codes: avidaR.R . convert_org_into_seq.R . convert_seq_into_org.R . data_access.R . get_db_summary.R . get_docker_image_from_experiment_id.R . get_doi_from_experiment_id.R . get_experiment_id_from_organism_id.R . get_genome_id_from_genome_seq.R . get_genome_id_from_logic_operation.R . get_genome_id_from_phenotype_id.R . get_genome_id_from_transcriptome_id.R . get_genome_id_of_wild-type_organisms.R . get_genome_seq_from_genome_id.R . get_logic_operation_from_phenotype_id.R . get_mutant_at_pos.R . get_phenotype_id_from_genome_id.R . get_phenotype_id_from_genome_seq.R . get_phenotype_id_from_logic_operation.R . get_phenotype_id_from_transcriptome_id.R . get_tandem_id_from_genome_id.R . get_tandem_id_from_genome_seq.R . get_tandem_id_from_logic_operation.R . get_tandem_id_from_phenotype_id.R . get_tandem_seq_from_tandem_id.R . get_transcriptome_id_from_genome_id.R . get_transcriptome_id_from_genome_seq.R . get_transcriptome_id_from_logic_operation.R . get_transcriptome_id_from_phenotype_id.R . get_transcriptome_seq_from_transcriptome_id.R . plot_transcriptome.R . utils.R .  Full avidaR package functions and examples
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