Other packages > Find by keyword >

apTreeshape  

Analyses of Phylogenetic Treeshape
View on CRAN: Click here


Download and install apTreeshape package within the R console
Install from CRAN:
install.packages("apTreeshape")

Install from Github:
library("remotes")
install_github("cran/apTreeshape")

Install by package version:
library("remotes")
install_version("apTreeshape", "1.5-0.1")



Attach the package and use:
library("apTreeshape")
Maintained by
Michael Blum
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2005-09-06
Latest Update:
Description:
Simulation and analysis of phylogenetic tree topologies using statistical indices. It is a companion library of the 'ape' package. It provides additional functions for reading, plotting, manipulating phylogenetic trees. It also offers convenient web-access to public databases, and enables testing null models of macroevolution using corrected test statistics. Trees of class "phylo" (from 'ape' package) can be converted easily. Implements methods described in Bortolussi et al. (2005) and Maliet et al. (2017) .
How to cite:
Michael Blum (2005). apTreeshape: Analyses of Phylogenetic Treeshape. R package version 1.5-0.1, https://cran.r-project.org/web/packages/apTreeshape. Accessed 06 Mar. 2026.
Previous versions and publish date:
1.0.0 (2005-09-06 23:47), 1.1.0 (2005-11-18 20:09), 1.2.0 (2006-02-10 14:20), 1.2.1 (2006-06-16 16:07), 1.3-2 (2007-01-22 20:08), 1.3.1 (2006-08-31 08:15), 1.4-0 (2007-04-25 23:00), 1.4-1 (2009-03-17 19:17), 1.4-2 (2010-03-18 20:15), 1.4-3 (2010-04-23 10:25), 1.4-4 (2012-10-29 06:58), 1.4-5 (2012-11-09 07:03), 1.5-0.1 (2020-10-12 16:12), 1.5-0 (2018-04-04 13:26)
Other packages that cited apTreeshape R package
View apTreeshape citation profile
Other R packages that apTreeshape depends, imports, suggests or enhances
Functions, R codes and Examples using the apTreeshape R package
Some associated functions: a_N . aldous.test . all.equal.treeshape . apTreeshape-internal . as.phylo.treeshape . as.treeshape . aux_lik . bind.trees . build_tree . carnivora.treeshape . change_int . change_int_eta . cladesize . colless . cutreeshape . cytochromc . depth . enhance . enhance_eta . get_PD_sample . get_extinction_list . get_tree_beta . hivtree.treeshape . index.test . insert . lambda.epsilon . lambda_N . likelihood.test . maxlik.betasplit . mcmc_alpha . mcmc_eta . nodes_depths_ordonnes . plot.treeshape . primates . rbactrian . rhodopsin . rtreeshape . sackin . shape.statistic . shift.test . simulate.R.K . simulate.R . simulate.Tau.X . simulate.Yi . simulate_kingman . simulate_tree . simulate_yule . smaller.clade.spectrum . spectrum.treeshape . split . subtree.test . summary.treeshape . tipsubtree . transform . transform_eta . treeshape . universal.treeshape . yule_lengths . 
Some associated R codes: Delta.R . aldous.test.R . all.equal.treeshape.R . ancestor.R . as.phylo.treeshape.R . as.treeshape.R . as.treeshape.phylo.R . as.treeshape.treebalance.R . cladesize.R . colless.R . colless.test.R . cutreeshape.R . get_PD_sample.R . get_tree_beta.R . is.binary.phylo.R . likelihood.test.R . logratio.R . maxlik.betasplit.R . mcmc_alpha.R . mcmc_eta.R . plot.treeshape.R . raldous.R . rbiased.R . rpda.R . rtreeshape.R . ryule.R . sackin.R . sackin.test.R . shape.statistic.R . shift.test.R . simulate_kingman.R . simulate_tree.R . simulate_yule.R . smaller.clade.spectrum.R . smaller.clade.spectrum2.R . spectrum.treeshape.R . subtree.test.R . summary.treeshape.R . tipsubtree.R . treebalance.R . treeshape.R .  Full apTreeshape package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

DatabionicSwarm  
Swarm Intelligence for Self-Organized Clustering
Algorithms implementing populations of agents that interact with one another and sense their environ ...
Download / Learn more Package Citations See dependency  
solitude  
An Implementation of Isolation Forest
Isolation forest is anomaly detection method introduced by the paper Isolation based Anomaly Detecti ...
Download / Learn more Package Citations See dependency  
mlr3viz  
Visualizations for 'mlr3'
Visualization package of the 'mlr3' ecosystem. It features plots for mlr3 objects such as tasks, le ...
Download / Learn more Package Citations See dependency  
openxlsx  
Read, Write and Edit xlsx Files
Simplifies the creation of Excel .xlsx files by providing a high level interface to writing, stylin ...
Download / Learn more Package Citations See dependency  
lbfgs  
Limited-memory BFGS Optimization
A wrapper built around the libLBFGS optimization library by Naoaki Okazaki. The lbfgs package implem ...
Download / Learn more Package Citations See dependency  
EMVS  
The Expectation-Maximization Approach to Bayesian Variable Selection
An efficient expectation-maximization algorithm for fitting Bayesian spike-and-slab regularization p ...
Download / Learn more Package Citations See dependency  

26,264

R Packages

223,360

Dependencies

70,376

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA