Other packages > Find by keyword >

apTreeshape  

Analyses of Phylogenetic Treeshape
View on CRAN: Click here


Download and install apTreeshape package within the R console
Install from CRAN:
install.packages("apTreeshape")

Install from Github:
library("remotes")
install_github("cran/apTreeshape")

Install by package version:
library("remotes")
install_version("apTreeshape", "1.5-0.1")



Attach the package and use:
library("apTreeshape")
Maintained by
Michael Blum
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2005-09-06
Latest Update:
Description:
Simulation and analysis of phylogenetic tree topologies using statistical indices. It is a companion library of the 'ape' package. It provides additional functions for reading, plotting, manipulating phylogenetic trees. It also offers convenient web-access to public databases, and enables testing null models of macroevolution using corrected test statistics. Trees of class "phylo" (from 'ape' package) can be converted easily. Implements methods described in Bortolussi et al. (2005) and Maliet et al. (2017) .
How to cite:
Michael Blum (2005). apTreeshape: Analyses of Phylogenetic Treeshape. R package version 1.5-0.1, https://cran.r-project.org/web/packages/apTreeshape. Accessed 06 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:18), 1.0.0 (2005-09-06 23:47), 1.1.0 (2005-11-18 20:09), 1.2.0 (2006-02-10 14:20), 1.2.1 (2006-06-16 16:07), 1.3-2 (2007-01-22 20:08), 1.3.1 (2006-08-31 08:15), 1.4-0 (2007-04-25 23:00), 1.4-1 (2009-03-17 19:17), 1.4-2 (2010-03-18 20:15), 1.4-3 (2010-04-23 10:25), 1.4-4 (2012-10-29 06:58), 1.4-5 (2012-11-09 07:03), 1.5-0.1 (2020-10-12 16:12), 1.5-0 (2018-04-04 13:26)
Other packages that cited apTreeshape R package
View apTreeshape citation profile
Other R packages that apTreeshape depends, imports, suggests or enhances
Functions, R codes and Examples using the apTreeshape R package
Some associated functions: a_N . aldous.test . all.equal.treeshape . apTreeshape-internal . as.phylo.treeshape . as.treeshape . aux_lik . bind.trees . build_tree . carnivora.treeshape . change_int . change_int_eta . cladesize . colless . cutreeshape . cytochromc . depth . enhance . enhance_eta . get_PD_sample . get_extinction_list . get_tree_beta . hivtree.treeshape . index.test . insert . lambda.epsilon . lambda_N . likelihood.test . maxlik.betasplit . mcmc_alpha . mcmc_eta . nodes_depths_ordonnes . plot.treeshape . primates . rbactrian . rhodopsin . rtreeshape . sackin . shape.statistic . shift.test . simulate.R.K . simulate.R . simulate.Tau.X . simulate.Yi . simulate_kingman . simulate_tree . simulate_yule . smaller.clade.spectrum . spectrum.treeshape . split . subtree.test . summary.treeshape . tipsubtree . transform . transform_eta . treeshape . universal.treeshape . yule_lengths . 
Some associated R codes: Delta.R . aldous.test.R . all.equal.treeshape.R . ancestor.R . as.phylo.treeshape.R . as.treeshape.R . as.treeshape.phylo.R . as.treeshape.treebalance.R . cladesize.R . colless.R . colless.test.R . cutreeshape.R . get_PD_sample.R . get_tree_beta.R . is.binary.phylo.R . likelihood.test.R . logratio.R . maxlik.betasplit.R . mcmc_alpha.R . mcmc_eta.R . plot.treeshape.R . raldous.R . rbiased.R . rpda.R . rtreeshape.R . ryule.R . sackin.R . sackin.test.R . shape.statistic.R . shift.test.R . simulate_kingman.R . simulate_tree.R . simulate_yule.R . smaller.clade.spectrum.R . smaller.clade.spectrum2.R . spectrum.treeshape.R . subtree.test.R . summary.treeshape.R . tipsubtree.R . treebalance.R . treeshape.R .  Full apTreeshape package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

gRim  
Graphical Interaction Models
Provides the following types of models: Models for contingency tables (i.e. log-linear models) Grap ...
Download / Learn more Package Citations See dependency  
gecko  
Geographical Ecology and Conservation Knowledge Online
Includes a collection of geographical analysis functions aimed primarily at ecology and conservation ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

28,905

R Packages

247,686

Dependencies

76,495

Author Associations

28,906

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA