Other packages > Find by keyword >

apTreeshape  

Analyses of Phylogenetic Treeshape
View on CRAN: Click here


Download and install apTreeshape package within the R console
Install from CRAN:
install.packages("apTreeshape")

Install from Github:
library("remotes")
install_github("cran/apTreeshape")

Install by package version:
library("remotes")
install_version("apTreeshape", "1.5-0.1")



Attach the package and use:
library("apTreeshape")
Maintained by
Michael Blum
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2005-09-06
Latest Update:
Description:
Simulation and analysis of phylogenetic tree topologies using statistical indices. It is a companion library of the 'ape' package. It provides additional functions for reading, plotting, manipulating phylogenetic trees. It also offers convenient web-access to public databases, and enables testing null models of macroevolution using corrected test statistics. Trees of class "phylo" (from 'ape' package) can be converted easily. Implements methods described in Bortolussi et al. (2005) and Maliet et al. (2017) .
How to cite:
Michael Blum (2005). apTreeshape: Analyses of Phylogenetic Treeshape. R package version 1.5-0.1, https://cran.r-project.org/web/packages/apTreeshape. Accessed 04 Jun. 2026.
Previous versions and publish date:
1.0.0 (2005-09-06 23:47), 1.1.0 (2005-11-18 20:09), 1.2.0 (2006-02-10 14:20), 1.2.1 (2006-06-16 16:07), 1.3-2 (2007-01-22 20:08), 1.3.1 (2006-08-31 08:15), 1.4-0 (2007-04-25 23:00), 1.4-1 (2009-03-17 19:17), 1.4-2 (2010-03-18 20:15), 1.4-3 (2010-04-23 10:25), 1.4-4 (2012-10-29 06:58), 1.4-5 (2012-11-09 07:03), 1.5-0.1 (2020-10-12 16:12), 1.5-0 (2018-04-04 13:26)
Other packages that cited apTreeshape R package
View apTreeshape citation profile
Other R packages that apTreeshape depends, imports, suggests or enhances
Functions, R codes and Examples using the apTreeshape R package
Some associated functions: a_N . aldous.test . all.equal.treeshape . apTreeshape-internal . as.phylo.treeshape . as.treeshape . aux_lik . bind.trees . build_tree . carnivora.treeshape . change_int . change_int_eta . cladesize . colless . cutreeshape . cytochromc . depth . enhance . enhance_eta . get_PD_sample . get_extinction_list . get_tree_beta . hivtree.treeshape . index.test . insert . lambda.epsilon . lambda_N . likelihood.test . maxlik.betasplit . mcmc_alpha . mcmc_eta . nodes_depths_ordonnes . plot.treeshape . primates . rbactrian . rhodopsin . rtreeshape . sackin . shape.statistic . shift.test . simulate.R.K . simulate.R . simulate.Tau.X . simulate.Yi . simulate_kingman . simulate_tree . simulate_yule . smaller.clade.spectrum . spectrum.treeshape . split . subtree.test . summary.treeshape . tipsubtree . transform . transform_eta . treeshape . universal.treeshape . yule_lengths . 
Some associated R codes: Delta.R . aldous.test.R . all.equal.treeshape.R . ancestor.R . as.phylo.treeshape.R . as.treeshape.R . as.treeshape.phylo.R . as.treeshape.treebalance.R . cladesize.R . colless.R . colless.test.R . cutreeshape.R . get_PD_sample.R . get_tree_beta.R . is.binary.phylo.R . likelihood.test.R . logratio.R . maxlik.betasplit.R . mcmc_alpha.R . mcmc_eta.R . plot.treeshape.R . raldous.R . rbiased.R . rpda.R . rtreeshape.R . ryule.R . sackin.R . sackin.test.R . shape.statistic.R . shift.test.R . simulate_kingman.R . simulate_tree.R . simulate_yule.R . smaller.clade.spectrum.R . smaller.clade.spectrum2.R . spectrum.treeshape.R . subtree.test.R . summary.treeshape.R . tipsubtree.R . treebalance.R . treeshape.R .  Full apTreeshape package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

murphydiagram  
Murphy Diagrams for Forecast Comparisons
Data and code for the paper by Ehm, Gneiting, Jordan and Krueger ('Of Quantiles and Expectiles: Con ...
Download / Learn more Package Citations See dependency  
golem  
A Framework for Robust Shiny Applications
An opinionated framework for building a production-ready 'Shiny' application. This package contains ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
AMPLE  
Shiny Apps to Support Capacity Building on Harvest Control Rules
Three Shiny apps are provided that introduce Harvest Control Rules (HCR) for fisheries management. ...
Download / Learn more Package Citations See dependency  
crplyr  
A 'dplyr' Interface for Crunch
In order to facilitate analysis of datasets hosted on the Crunch data platform ...
Download / Learn more Package Citations See dependency  
phers  
Calculate Phenotype Risk Scores
Use phenotype risk scores based on linked clinical and genetic data to study Mendelian disease and ...
Download / Learn more Package Citations See dependency  

27,268

R Packages

233,548

Dependencies

72,590

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA