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apTreeshape  

Analyses of Phylogenetic Treeshape
View on CRAN: Click here


Download and install apTreeshape package within the R console
Install from CRAN:
install.packages("apTreeshape")

Install from Github:
library("remotes")
install_github("cran/apTreeshape")

Install by package version:
library("remotes")
install_version("apTreeshape", "1.5-0.1")



Attach the package and use:
library("apTreeshape")
Maintained by
Michael Blum
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2005-09-06
Latest Update: 2020-10-12
Description:
Simulation and analysis of phylogenetic tree topologies using statistical indices. It is a companion library of the 'ape' package. It provides additional functions for reading, plotting, manipulating phylogenetic trees. It also offers convenient web-access to public databases, and enables testing null models of macroevolution using corrected test statistics. Trees of class "phylo" (from 'ape' package) can be converted easily. Implements methods described in Bortolussi et al. (2005) and Maliet et al. (2017) .
How to cite:
Michael Blum (2005). apTreeshape: Analyses of Phylogenetic Treeshape. R package version 1.5-0.1, https://cran.r-project.org/web/packages/apTreeshape. Accessed 06 Nov. 2024.
Previous versions and publish date:
1.0.0 (2005-09-06 23:47), 1.1.0 (2005-11-18 20:09), 1.2.0 (2006-02-10 14:20), 1.2.1 (2006-06-16 16:07), 1.3-2 (2007-01-22 20:08), 1.3.1 (2006-08-31 08:15), 1.4-0 (2007-04-25 23:00), 1.4-1 (2009-03-17 19:17), 1.4-2 (2010-03-18 20:15), 1.4-3 (2010-04-23 10:25), 1.4-4 (2012-10-29 06:58), 1.4-5 (2012-11-09 07:03), 1.5-0.1 (2020-10-12 16:12), 1.5-0 (2018-04-04 13:26)
Other packages that cited apTreeshape R package
View apTreeshape citation profile
Other R packages that apTreeshape depends, imports, suggests or enhances
Functions, R codes and Examples using the apTreeshape R package
Some associated functions: a_N . aldous.test . all.equal.treeshape . apTreeshape-internal . as.phylo.treeshape . as.treeshape . aux_lik . bind.trees . build_tree . carnivora.treeshape . change_int . change_int_eta . cladesize . colless . cutreeshape . cytochromc . depth . enhance . enhance_eta . get_PD_sample . get_extinction_list . get_tree_beta . hivtree.treeshape . index.test . insert . lambda.epsilon . lambda_N . likelihood.test . maxlik.betasplit . mcmc_alpha . mcmc_eta . nodes_depths_ordonnes . plot.treeshape . primates . rbactrian . rhodopsin . rtreeshape . sackin . shape.statistic . shift.test . simulate.R.K . simulate.R . simulate.Tau.X . simulate.Yi . simulate_kingman . simulate_tree . simulate_yule . smaller.clade.spectrum . spectrum.treeshape . split . subtree.test . summary.treeshape . tipsubtree . transform . transform_eta . treeshape . universal.treeshape . yule_lengths . 
Some associated R codes: Delta.R . aldous.test.R . all.equal.treeshape.R . ancestor.R . as.phylo.treeshape.R . as.treeshape.R . as.treeshape.phylo.R . as.treeshape.treebalance.R . cladesize.R . colless.R . colless.test.R . cutreeshape.R . get_PD_sample.R . get_tree_beta.R . is.binary.phylo.R . likelihood.test.R . logratio.R . maxlik.betasplit.R . mcmc_alpha.R . mcmc_eta.R . plot.treeshape.R . raldous.R . rbiased.R . rpda.R . rtreeshape.R . ryule.R . sackin.R . sackin.test.R . shape.statistic.R . shift.test.R . simulate_kingman.R . simulate_tree.R . simulate_yule.R . smaller.clade.spectrum.R . smaller.clade.spectrum2.R . spectrum.treeshape.R . subtree.test.R . summary.treeshape.R . tipsubtree.R . treebalance.R . treeshape.R .  Full apTreeshape package functions and examples
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