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TriadSim  

Simulating Triad Genomewide Genotypes
View on CRAN: Click here


Download and install TriadSim package within the R console
Install from CRAN:
install.packages("TriadSim")

Install from Github:
library("remotes")
install_github("cran/TriadSim")

Install by package version:
library("remotes")
install_version("TriadSim", "0.3.0")



Attach the package and use:
library("TriadSim")
Maintained by
Min Shi
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-05-13
Latest Update: 2021-09-08
Description:
Simulate genotypes for case-parent triads, case-control, and quantitative trait samples with realistic linkage diequilibrium structure and allele frequency distribution. For studies of epistasis one can simulate models that involve specific SNPs at specific sets of loci, which we will refer to as "pathways". TriadSim generates genotype data by resampling triad genotypes from existing data. The details of the method is described in the manuscript under preparation "Simulating Autosomal Genotypes with Realistic Linkage Disequilibrium and a Spiked in Genetic Effect" Shi, M., Umbach, D.M., Wise A.S., Weinberg, C.R.
How to cite:
Min Shi (2017). TriadSim: Simulating Triad Genomewide Genotypes. R package version 0.3.0, https://cran.r-project.org/web/packages/TriadSim. Accessed 03 Dec. 2024.
Previous versions and publish date:
0.0.1 (2017-05-13 01:20), 0.1.1 (2017-05-25 02:00), 0.2.0 (2020-07-12 17:30)
Other packages that cited TriadSim R package
View TriadSim citation profile
Other R packages that TriadSim depends, imports, suggests or enhances
Complete documentation for TriadSim
Functions, R codes and Examples using the TriadSim R package
Some associated functions: TriadSim . fit.risk.model.par . get.brks . get.target.geno . glue.chr.segment.par . pick_target.snp . rcmb.rate . snp.all2 . 
Some associated R codes: TriadSim_functions.R . data.R .  Full TriadSim package functions and examples
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