R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
TreeTools
View on CRAN: Click
here
Download and install TreeTools package within the R console
Install from CRAN:
install.packages("TreeTools")
Install from Github:
library("remotes")
install_github("cran/TreeTools") Install by package version:
library("remotes")
install_version("TreeTools", "2.0.0") Attach the package and use:
library("TreeTools")
Maintained by
Martin R. Smith
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-12-18
Latest Update: 2025-07-21
Description:
Efficient implementations of functions for the creation, modification and analysis of phylogenetic trees. Applications include: generation of trees with specified shapes; tree rearrangement; analysis of tree shape; rooting of trees and extraction of subtrees; calculation and depiction of split support; plotting the position of rogue taxa (Klopfstein & Spasojevic 2019) <doi:10.1371/journal.pone.0212942>; calculation of ancestor-descendant relationships, of 'stemwardness' (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>, and of tree balance (Mir et al. 2013) <doi:10.1016/j.mbs.2012.10.005>; artificial extinction (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>; import and export of trees from Newick, Nexus (Maddison et al. 1997) <doi:10.1093/sysbio/46.4.590>, and TNT <https://www.lillo.org.ar/phylogeny/tnt/> formats; and analysis of splits and cladistic information.
How to cite:
Martin R. Smith (2019). TreeTools: Create, Modify and Analyse Phylogenetic Trees. R package version 2.0.0, https://cran.r-project.org/web/packages/TreeTools. Accessed 20 Jul. 2026.
Previous versions and publish date:
(2026-07-09 08:28), 0.1.2 (2019-12-18 16:00), 0.1.3 (2019-12-19 19:20), 0.1.4 (2020-03-04 17:30), 1.0.0 (2020-06-08 16:50), 1.1.0 (2020-07-07 11:10), 1.2.0 (2020-08-03 17:30), 1.3.0 (2020-09-22 18:00), 1.3.1 (2020-10-03 17:40), 1.4.0 (2020-10-19 20:50), 1.4.1 (2020-12-09 09:30), 1.4.2 (2021-01-26 19:20), 1.4.3 (2021-04-12 14:50), 1.4.4 (2021-04-20 12:00), 1.4.5 (2021-06-23 09:00), 1.5.0 (2021-09-08 10:00), 1.5.1 (2021-10-06 14:00), 1.6.0 (2022-01-12 15:22), 1.7.0 (2022-03-21 09:50), 1.7.1 (2022-03-25 15:10), 1.7.2 (2022-05-24 21:10), 1.7.3 (2022-07-20 16:30), 1.8.0 (2022-09-15 11:40), 1.9.0 (2022-11-28 21:00), 1.9.1 (2023-03-20 18:00), 1.9.2 (2023-04-27 11:42), 1.10.0 (2023-08-19 02:22), 1.11.0 (2024-06-05 18:50), 1.11.1 (2024-06-07 17:30), 1.12.0 (2024-07-25 15:40), 1.13.0 (2025-01-10 19:20), 1.13.1 (2025-04-07 15:10), 1.14.0 (2025-05-13 20:50), 1.15.0 (2025-07-21 16:20), 1.16.0 (2025-08-22 15:10), 1.16.1 (2025-08-25 01:50), 2.0.0 (2025-09-23 12:30), 2.1.0 (2026-02-11 11:20), 2.2.0 (2026-03-20 07:11), 2.3.0 (2026-04-23 12:10)
Other packages that cited TreeTools R package
View TreeTools citation profile
Other R packages that TreeTools depends,
imports, suggests or enhances
Complete documentation for TreeTools
Functions, R codes and Examples using
the TreeTools R package
Some associated functions: AddTip . AncestorEdge . ApeTime . ArtificialExtinction . CharacterInformation . CladeSizes . CladisticInfo . ClusterTable-methods . ClusterTable . CollapseNode . CompatibleSplits . Consensus . ConsensusWithout . ConstrainedNJ . DescendantEdges . DoubleFactorial . DropTip . EdgeAncestry . EdgeDistances . EndSentence . EnforceOutgroup . ExtractTaxa . GenerateTree . Hamming . ImposeConstraint . KeptPaths . KeptVerts . LabelSplits . LeafLabelInterchange . ListAncestors . Lobo.data . MRCA . MSTEdges . MakeTreeBinary . MatrixToPhyDat . MorphoBankDecode . N1Spr . NDescendants . NJTree . NPartitionPairs . NRooted . NSplits . NTip . NewickTree . Neworder . NodeDepth . NodeOrder . NonDuplicateRoot . PairwiseDistances . PathLengths . PhyToString . PolarizeSplits . ReadCharacters . ReadTntTree . Renumber . RenumberTips . Reorder . RightmostCharacter . RoguePlot . RootNode . RootTree . SampleOne . SortTree . SpectrumLegend . SplitFrequency . SplitInformation . SplitMatchProbability . Splits . SplitsInBinaryTree . Stemwardness . Subsplit . Subtree . SupportColour . TipLabels . TipsInSplits . TotalCopheneticIndex . TreeIsRooted . TreeNumber . TreeShape . TreeTools-package . TreesMatchingSplit . TreesMatchingTree . TrivialSplits . TrivialTree . Unquote . UnrootedTreesMatchingSplit . UnshiftTree . WriteTntCharacters . as.Newick . as.multiPhylo . brewer . dot-RandomParent . doubleFactorials . edge_to_splits . logDoubleFactorials . match.Splits . nRootedShapes . print.TreeNumber . sapply64 . sort.multiPhylo . xor .
Some associated R codes: AddTip.R . ArtificialExtinction.R . BigInteger.R . ClusterTable.R . Combinatorics.R . Consensus.R . DropTip.R . ImposeConstraint.R . Information.R . KeptPaths.R . KeptVerts.R . PathLengths.R . RcppExports-manual.R . RcppExports.R . ReadTntTree.R . RoguePlot.R . SplitFunctions.R . Splits.R . Stemwardness.R . Support.R . TotalCopheneticIndex.R . TreeNumber.R . TreeTools-package.R . as.matrix.R . as.multiPhylo.R . data.R . helper_functions.R . mst.R . parse_files.R . phylo.R . sort.R . split_analysis.R . tree_comparison.R . tree_display.R . tree_generation.R . tree_information.R . tree_numbering.R . tree_properties.R . tree_rearrangement.R . tree_shape.R . tree_write.R . zzz.R . Full TreeTools package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
r2resize
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
iemiscdata
Miscellaneous data sets [Chemistry, Engineering Economics,
Environmental/Water Resources Engineerin ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Irucka Embry (view profile)
metaLik
First- and higher-order likelihood inference in
meta-analysis and meta-regression models. ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Cristiano Varin (view profile)
secsse
Simultaneously infers state-dependent diversification across
two or more states of a single or mult ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Rampal S. Etienne (view profile)
ecospat
Collection of R functions and data sets for the support of spatial ecology analyses with a focus on ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Olivier Broennimann (view profile)
27,889
R Packages
239,283
Dependencies
74,019
Author Associations
27,890
Publication Badges
