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TipDatingBeast
View on CRAN: Click
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Download and install TipDatingBeast package within the R console
Install from CRAN:
install.packages("TipDatingBeast")
Install from Github:
library("remotes")
install_github("cran/TipDatingBeast")
Install by package version:
library("remotes")
install_version("TipDatingBeast", "1.1-0")
Attach the package and use:
library("TipDatingBeast")
Maintained by
Camilo Khatchikian
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-07-29
Latest Update: 2019-10-22
Description:
Assists performing tip-dating of phylogenetic trees with BEAST BEAST is a popular software for phylogenetic analysis. The package assists the implementation of various phylogenetic tip- dating tests using BEAST. It contains two main functions. The first one allows preparing date randomization analyses, which assess the temporal signal of a data set. The second function allows performing leave-one-out analyses, which test for the consistency between independent calibration sequences and allow pinpointing those leading to potential bias. The included tutorial provides detailed step-by-step instructions. An expanded description of the package can be found in article: Rieux, A. and Khatchikian, C.E. (2017), TIPDATINGBEAST: an R package to assist the implementation of phylogenetic tip-dating tests using BEAST. Molecular Ecology Resources, 17: 608-613. <onlinelibrary.wiley.com/doi/full/10.1111/1755-0998.12603>.
How to cite:
Camilo Khatchikian (2015). TipDatingBeast: Using Tip Dates with Phylogenetic Trees in BEAST. R package version 1.1-0, https://cran.r-project.org/web/packages/TipDatingBeast
Previous versions and publish date:
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Other R packages that TipDatingBeast depends,
imports, suggests or enhances
Functions, R codes and Examples using
the TipDatingBeast R package
Some associated functions: ListTaxa . PlotDRT . PlotLOOCV . RandomCluster . RandomDates . TaxaOut . TaxonOut . TipDatingBeast-package .
Some associated R codes: ListTaxa.R . Plot_DRT.R . Plot_LOOCV.R . RandomCluster.R . RandomDates.R . TaxaOut.R . TaxonOut.R . Full TipDatingBeast package functions and examples
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