Other packages > Find by keyword >

TipDatingBeast  

Using Tip Dates with Phylogenetic Trees in BEAST
View on CRAN: Click here


Download and install TipDatingBeast package within the R console
Install from CRAN:
install.packages("TipDatingBeast")

Install from Github:
library("remotes")
install_github("cran/TipDatingBeast")

Install by package version:
library("remotes")
install_version("TipDatingBeast", "1.1-0")



Attach the package and use:
library("TipDatingBeast")
Maintained by
Camilo Khatchikian
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-07-29
Latest Update: 2019-10-22
Description:
Assists performing tip-dating of phylogenetic trees with BEAST BEAST is a popular software for phylogenetic analysis. The package assists the implementation of various phylogenetic tip- dating tests using BEAST. It contains two main functions. The first one allows preparing date randomization analyses, which assess the temporal signal of a data set. The second function allows performing leave-one-out analyses, which test for the consistency between independent calibration sequences and allow pinpointing those leading to potential bias. The included tutorial provides detailed step-by-step instructions. An expanded description of the package can be found in article: Rieux, A. and Khatchikian, C.E. (2017), TIPDATINGBEAST: an R package to assist the implementation of phylogenetic tip-dating tests using BEAST. Molecular Ecology Resources, 17: 608-613. <onlinelibrary.wiley.com/doi/full/10.1111/1755-0998.12603>.
How to cite:
Camilo Khatchikian (2015). TipDatingBeast: Using Tip Dates with Phylogenetic Trees in BEAST. R package version 1.1-0, https://cran.r-project.org/web/packages/TipDatingBeast. Accessed 07 Oct. 2026.
Previous versions and publish date:
(2026-07-09 08:28), 0.1-6 (2015-07-29 06:21), 1.0-2 (2016-05-27 18:50), 1.0-3 (2016-06-06 17:56), 1.0-4 (2016-06-14 08:29), 1.0-5 (2016-09-05 20:19), 1.0-6 (2017-11-22 05:11), 1.0-7 (2018-01-30 20:22), 1.0-8 (2018-03-29 11:46)
Other packages that cited TipDatingBeast R package
View TipDatingBeast citation profile
Other R packages that TipDatingBeast depends, imports, suggests or enhances
Complete documentation for TipDatingBeast
Functions, R codes and Examples using the TipDatingBeast R package
Some associated functions: ListTaxa . PlotDRT . PlotLOOCV . RandomCluster . RandomDates . TaxaOut . TaxonOut . TipDatingBeast-package . 
Some associated R codes: ListTaxa.R . Plot_DRT.R . Plot_LOOCV.R . RandomCluster.R . RandomDates.R . TaxaOut.R . TaxonOut.R .  Full TipDatingBeast package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

blandr  
Bland-Altman Method Comparison
Carries out Bland Altman analyses (also known as a Tukey mean-difference plot) as described by JM B ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
ggTimeSeries  
Time Series Visualisations Using the Grammar of Graphics
Provides additional display mediums for time series visualisations. ...
Download / Learn more Package Citations See dependency  
plaqr  
Partially Linear Additive Quantile Regression
Estimation, prediction, thresholding, transformation, and plotting for partially linear additive qua ...
Download / Learn more Package Citations See dependency  
skewlmm  
Scale Mixture of Skew-Normal Linear Mixed Models
It fits scale mixture of skew-normal linear mixed models using an expectation–maximization (EM) ty ...
Download / Learn more Package Citations See dependency  
splm  
Econometric Models for Spatial Panel Data
ML and GM estimation and diagnostic testing of econometric models for spatial panel data. ...
Download / Learn more Package Citations See dependency  

28,905

R Packages

247,686

Dependencies

76,495

Author Associations

28,906

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA