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TIMP
View on CRAN: Click
here
Download and install TIMP package within the R console
Install from CRAN:
install.packages("TIMP")
Install from Github:
library("remotes")
install_github("cran/TIMP")
Install by package version:
library("remotes")
install_version("TIMP", "1.13.6")
Attach the package and use:
library("TIMP")
Maintained by
Joris Snellenburg
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2007-05-01
Latest Update: 2022-12-12
Description:
A problem solving environment (PSE) for fitting separable nonlinear models to measurements arising in physics and chemistry experiments, as described by Mullen & van Stokkum (2007) <doi:10.18637/jss.v018.i03> for its use in fitting time resolved spectroscopy data, and as described by Laptenok et al. (2007) <doi:10.18637/jss.v018.i08> for its use in fitting Fluorescence Lifetime Imaging Microscopy (FLIM) data, in the study of Förster Resonance Energy Transfer (FRET).'TIMP' also serves as the computation backend for the 'GloTarAn' software, a graphical user interface for the package, as described in Snellenburg et al. (2012) <doi:10.18637/jss.v049.i03>.
How to cite:
Joris Snellenburg (2007). TIMP: Fitting Separable Nonlinear Models in Spectroscopy and Microscopy. R package version 1.13.6, https://cran.r-project.org/web/packages/TIMP. Accessed 05 Jan. 2025.
Previous versions and publish date:
1.2 (2007-05-01 21:03), 1.3 (2007-07-23 11:26), 1.4 (2007-10-04 22:34), 1.5 (2008-01-29 09:14), 1.6 (2008-04-27 18:27), 1.7 (2008-08-22 15:50), 1.8 (2008-10-13 11:57), 1.9 (2010-02-11 09:45), 1.10.1 (2011-04-24 08:05), 1.10.2 (2012-07-22 10:17), 1.10.3 (2013-09-30 08:07), 1.10 (2010-08-24 16:33), 1.11.0 (2014-01-25 10:15), 1.12.0 (2014-12-02 16:12), 1.12.1 (2014-12-11 13:17), 1.13.0 (2015-10-19 18:07), 1.13.1 (2019-01-28 09:16), 1.13.2 (2019-03-15 10:13)
Other packages that cited TIMP R package
View TIMP citation profile
Other R packages that TIMP depends,
imports, suggests or enhances
Complete documentation for TIMP
Functions, R codes and Examples using
the TIMP R package
Some associated functions: FLIMplots . TIMP-package . amp-class . baseIRF . dat-class . denS4 . divergeZimage . donorAcceptorTagged . donorTagged . efit2file . examineFit . fit-class . fitModel . getClpindepX . getResid . getResults . initModel . internals . kin-class . kinopt-class . mass-class . massopt-class . mea_IRF . modifyModel . multimodel-class . multitheta-class . opt-class . outlierCorr . plotter . preProcess . readData . readclp0 . res-class . residPart . spec-class . specopt-class . sumKinSpecEst . target . theta-class . writeAverage .
Some associated R codes: addDscal.R . addOutlierWeights.R . addPrel.R . addPrelCl.R . amp.R . applyKinScalSpecialFun.R . applyWeightingModel.R . barplot3.R . baseCorlambda.R . baseCortime.R . baseIRF.R . calcAniSignal.R . calcB.R . calcC.R . calcCirf.R . calcD.R . calcEbspline.R . calcEhiergaus.R . compCoh.R . compModel.R . compModelMass.R . compOsc.R . convGausExp.R . convolveUnitStep.R . dat.R . diffAdd.R . diffChange.R . diffFree.R . diffRel.R . diffRemove.R . displayEst.R . divergeZimage.R . doClpConstr.R . doConstrSuper.R . doSVD.R . doubleDiff.R . efit2file.R . examineFit.R . fillK.R . fillResult.R . fit.R . fitModel.R . fullKF.R . gaus.R . getAniA.R . getAniK.R . getAniSuper.R . getAnisotropy.R . getAutoClp0.R . getClpConstr.R . getCoh.R . getCohToPlot.R . getConToPlot.R . getConstrained.R . getDiffTheta.R . getDiffThetaChange.R . getDiffThetaCl.R . getDiffThetaClChange.R . getFixed.R . getGroups.R . getJac.R . getKinConcen.R . getLightDiff.R . getModel.R . getMvec.R . getOsc.R . getPar.R . getPrel.R . getPrelBetweenDatasets.R . getPrelTheta.R . getResid.R . getResidRet.R . getResults.R . getSelectedTracesMax.R . getSpecList.R . getSpecToPlot.R . getStartTri.R . getStdErrClp.R . getStreakBacksweep.R . getTheta.R . getThetaCl.R . getXList.R . getXsuper.R . init.dat.R . init.fit.R . init.multimodel.R . init.multitheta.R . init.opt.R . init.res.R . init.theta.R . initModel.R . initModellist.R . initOneModel.R . irfparF.R . jacobian.R . kin.R . kinopt.R . l2nu.R . linloglines.R . linlogplot.R . linlogtics.R . mass.R . massopt.R . matlinlogplot.R . modifyModel.R . multiLin.R . multimodel.R . multitheta.R . normdat.R . opt.R . outlierCorr.R . plotClp.R . plotFLIM.R . plotFLIMresid.R . plotKinBreakDown.R . plotKinSpecEst.R . plotMassSpec.R . plotResids.R . plotSpecKin.R . plotSpectraSuper.R . plotTracesResids.R . plotTracesSuper.R . plotTri.R . preProcess.R . processOrder.R . readData.R . readclp0.R . res.R . rescomp.R . sample_sel.R . scaleConList.R . setGenerics.R . set_getClpindepX_amp.R . set_getClpindepX_kin.R . set_getClpindepX_mass.R . set_getClpindepX_spec.R . set_initModelClass_amp.R . set_initModelClass_kin.R . set_initModelClass_mass.R . set_initModelClass_spec.R . set_plotter_kin.R . set_plotter_mass.R . set_plotter_spec.R . set_residPart_amp.R . set_residPart_kin.R . set_residPart_mass.R . set_residPart_spec.R . simndecay_gen.R . simpExp.R . simpPol.R . skew.R . spec.R . specModel.R . specopt.R . specparF.R . sumKinSpecEst.R . summary.R . superLogistic.R . theta.R . triResolve.R . unitstep.R . weightNL.R . weightPsi.R . weightSM.R . writeAverage.R . writeData.R . writeEst.R . writeFit.R . zzz.R . Full TIMP package functions and examples
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