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SubVis  

Visual Exploration of Protein Alignments Resulting from Multiple Substitution Matrices
View on CRAN: Click here


Download and install SubVis package within the R console
Install from CRAN:
install.packages("SubVis")

Install from Github:
library("remotes")
install_github("cran/SubVis")

Install by package version:
library("remotes")
install_version("SubVis", "2.0.2")



Attach the package and use:
library("SubVis")
Maintained by
Scott Barlowe
[Scholar Profile | Author Map]
First Published: 2016-06-16
Latest Update: 2017-05-23
Description:
Substitution matrices are important parameters in protein alignment algorithms. These matrices represent the likelihood that an amino acid will be substituted for another during mutation. This tool allows users to apply predefined and custom matrices and then explore the resulting alignments with interactive visualizations.'SubVis' requires the availability of a web browser.
How to cite:
Scott Barlowe (2016). SubVis: Visual Exploration of Protein Alignments Resulting from Multiple Substitution Matrices. R package version 2.0.2, https://cran.r-project.org/web/packages/SubVis. Accessed 18 Apr. 2025.
Previous versions and publish date:
1.0.0 (2016-06-16 06:47), 1.1.0 (2016-06-29 22:36), 2.0.0 (2017-01-06 16:53), 2.0.1 (2017-01-12 16:14)
Other packages that cited SubVis R package
View SubVis citation profile
Other R packages that SubVis depends, imports, suggests or enhances
Complete documentation for SubVis
Functions, R codes and Examples using the SubVis R package
Some associated functions: startSubVis . 
Some associated R codes: startSubVis.R .  Full SubVis package functions and examples
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