Other packages > Find by keyword >

StAMPP  

Statistical Analysis of Mixed Ploidy Populations
View on CRAN: Click here


Download and install StAMPP package within the R console
Install from CRAN:
install.packages("StAMPP")

Install from Github:
library("remotes")
install_github("cran/StAMPP")

Install by package version:
library("remotes")
install_version("StAMPP", "1.6.3")



Attach the package and use:
library("StAMPP")
Maintained by
LW Pembleton
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2013-05-29
Latest Update: 2021-08-08
Description:
Allows users to calculate pairwise Nei's Genetic Distances (Nei 1972), pairwise Fixation Indexes (Fst) (Weir & Cockerham 1984) and also Genomic Relationship matrixes following Yang et al. (2010) in mixed and single ploidy populations. Bootstrapping across loci is implemented during Fst calculation to generate confidence intervals and p-values around pairwise Fst values. StAMPP utilises SNP genotype data of any ploidy level (with the ability to handle missing data) and is coded to utilise multithreading where available to allow efficient analysis of large datasets. StAMPP is able to handle genotype data from genlight objects allowing integration with other packages such adegenet. Please refer to LW Pembleton, NOI Cogan & JW Forster, 2013, Molecular Ecology Resources, 13(5), 946-952. <doi:10.1111/1755-0998.12129> for the appropriate citation and user manual. Thank you in advance.
How to cite:
LW Pembleton (2013). StAMPP: Statistical Analysis of Mixed Ploidy Populations. R package version 1.6.3, https://cran.r-project.org/web/packages/StAMPP. Accessed 26 Jun. 2026.
Previous versions and publish date:
1.0 (2013-05-29 07:53), 1.1 (2013-06-06 09:41), 1.2 (2014-03-11 01:45), 1.3 (2014-09-01 12:16), 1.4 (2015-07-06 06:31), 1.5.1 (2017-11-10 12:44), 1.6.1 (2020-03-20 11:20), 1.6.2 (2021-04-26 19:00)
Other packages that cited StAMPP R package
View StAMPP citation profile
Other R packages that StAMPP depends, imports, suggests or enhances
Complete documentation for StAMPP
Functions, R codes and Examples using the StAMPP R package
Some associated functions: potato.mini . potato . stampp2genlight . stamppAmova . stamppConvert . stamppFst . stamppGmatrix . stamppNeisD . stamppPhylip . 
Some associated R codes: potato.R . potato.mini.R . stampp2genlight.R . stamppAmova.R . stamppConvert.R . stamppFst.R . stamppGmatrix.R . stamppNeisD.R . stamppPhylip.R .  Full StAMPP package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

infotheo  
Information-Theoretic Measures
Implements various measures of information theory based on several entropy estimators. ...
Download / Learn more Package Citations See dependency  
ggblanket  
Simplify 'ggplot2' Visualisation
Simplify 'ggplot2' visualisation with 'ggblanket' wrapper functions. ...
Download / Learn more Package Citations See dependency  
colormap  
Color Palettes using Colormaps Node Module
Allows to generate colors from palettes defined in the colormap module of 'Node.js'. (see ...
Download / Learn more Package Citations See dependency  
PoisBinOrdNor  
Data Generation with Poisson, Binary, Ordinal and Normal Components
Generation of multiple count, binary, ordinal and normal variables simultaneously given the marginal ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
tactile  
New and Extended Plots, Methods, and Panel Functions for 'lattice'
Extensions to 'lattice', providing new high-level functions, methods for existing functions, panel f ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA