Other packages > Find by keyword >

SeuratObject  

Data Structures for Single Cell Data
View on CRAN: Click here


Download and install SeuratObject package within the R console
Install from CRAN:
install.packages("SeuratObject")

Install from Github:
library("remotes")
install_github("cran/SeuratObject")

Install by package version:
library("remotes")
install_version("SeuratObject", "5.0.2")



Attach the package and use:
library("SeuratObject")
Maintained by
Rahul Satija
[Scholar Profile | Author Map]
First Published: 2021-01-15
Latest Update: 2023-11-17
Description:
Defines S4 classes for single-cell genomic data and associated information, such as dimensionality reduction embeddings, nearest-neighbor graphs, and spatially-resolved coordinates. Provides data access methods and R-native hooks to ensure the Seurat object is familiar to other R users. See Satija R, Farrell J, Gennert D, et al (2015) , Macosko E, Basu A, Satija R, et al (2015) , and Stuart T, Butler A, et al (2019) , Hao Y, Hao S, et al (2021) and Hao Y, et al (2023) for more details.
How to cite:
Rahul Satija (2021). SeuratObject: Data Structures for Single Cell Data. R package version 5.0.2, https://cran.r-project.org/web/packages/SeuratObject. Accessed 18 Apr. 2025.
Previous versions and publish date:
4.0.0 (2021-01-15 09:50), 4.0.1 (2021-05-08 06:50), 4.0.2 (2021-06-09 11:20), 4.0.3 (2021-11-10 23:20), 4.0.4 (2021-11-23 21:00), 4.1.0 (2022-05-01 16:40), 4.1.1 (2022-08-29 21:50), 4.1.2 (2022-09-20 18:30), 4.1.3 (2022-11-07 19:50), 4.1.4 (2023-09-27 00:30), 5.0.0 (2023-10-26 22:30), 5.0.1 (2023-11-17 23:40)
Other packages that cited SeuratObject R package
View SeuratObject citation profile
Other R packages that SeuratObject depends, imports, suggests or enhances
Complete documentation for SeuratObject
Functions, R codes and Examples using the SeuratObject R package
Some associated functions: AddMetaData . Angles . Assay-class . Assay-methods . AssayData . AttachDeps . Boundaries . Cells . CellsByIdentities . CellsByImage . Centroids-class . Centroids-methods . CheckDots . CheckGC . CheckMatrix . Command . CreateAssayObject . CreateCentroids . CreateDimReducObject . CreateFOV . CreateMolecules . CreateSegmentation . CreateSeuratObject . Crop . DefaultAssay . DefaultDimReduc . DefaultFOV . DimReduc-class . DimReduc-methods . Distances . Embeddings . EmptyDF . FOV-class . FOV-methods . FetchData . FilterObjects . GetImage . GetTissueCoordinates . Graph-class . Idents . Images . Index . Indices . IsGlobal . IsMatrixEmpty . IsNamedList . JS . JackStrawData-class . JackStrawData-methods . Key . KeyMixin-class . Loadings . LogMap-class . LogSeuratCommand . MatchCells . Misc . Molecules-class . Molecules-methods . Neighbor-class . Neighbor-methods . ObjectAccess . Overlay . PackageCheck . PolyVtx . Project . Radius . RandomName . RenameAssays . RenameCells . RowMergeSparseMatrices . Segmentation-class . Segmentation-methods . Seurat-class . Seurat-methods . SeuratCommand-class . SeuratCommand-methods . SeuratObject-package . Simplify . SpatialImage-class . SpatialImage-methods . Stdev . Theta . Tool . UpdateSeuratObject . UpdateSlots . VariableFeatures . Version . WhichCells . aggregate . as.Centroids . as.Graph . as.Neighbor . as.Seurat . as.sparse . dot-Contains . dot-DefaultFOV . oldseurat-class . pbmc_small . reexports . s4list . set-if-na . set-if-null . 
Some associated R codes: RcppExports.R . assay.R . centroids.R . command.R . data.R . default.R . dimreduc.R . fov.R . generics.R . graph.R . jackstraw.R . keymixin.R . logmap.R . molecules.R . neighbor.R . segmentation.R . seurat.R . spatial.R . utils.R . zzz.R .  Full SeuratObject package functions and examples
Downloads during the last 30 days
03/1903/2003/2103/2203/2303/2403/2503/2603/2703/2803/2903/3003/3104/0104/0204/0304/0404/0504/0604/0704/0804/0904/1004/1104/1204/1304/1404/1504/1604/17Downloads for SeuratObject4006008001000120014001600180020002200TrendBars

Today's Hot Picks in Authors and Packages

pssmooth  
Flexible and Efficient Evaluation of Principal Surrogates/Treatment Effect Modifiers
Implements estimation and testing procedures for evaluating an intermediate biomarker response as a ...
Download / Learn more Package Citations See dependency  
SeqAlloc  
Sequential Allocation for Prospective Experiments
Potential randomization schemes are prospectively evaluated when units are assigned to treatment ar ...
Download / Learn more Package Citations See dependency  
shinyMobile  
Mobile Ready 'shiny' Apps with Standalone Capabilities
Develop outstanding 'shiny' apps for 'iOS', 'Android', desktop as well as beautiful 'shiny' gadgets. ...
Download / Learn more Package Citations See dependency  
nsga3  
An Implementation of Non-Dominated Sorting Genetic Algorithm III for Feature Selection
An adaptation of Non-dominated Sorting Genetic Algorithm III for multi objective feature selection ...
Download / Learn more Package Citations See dependency  
CDNmoney  
Components of Canadian Monetary and Credit Aggregates
Components of Canadian Credit Aggregates and Monetary Aggregates with continuity adjustments. ...
Download / Learn more Package Citations See dependency  
ff  
Memory-Efficient Storage of Large Data on Disk and Fast Access Functions
The ff package provides data structures that are stored on disk but behave (almost) as if they were ...
Download / Learn more Package Citations See dependency  

24,012

R Packages

207,311

Dependencies

65,069

Author Associations

24,013

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA