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SeuratObject  

Data Structures for Single Cell Data
View on CRAN: Click here


Download and install SeuratObject package within the R console
Install from CRAN:
install.packages("SeuratObject")

Install from Github:
library("remotes")
install_github("cran/SeuratObject")

Install by package version:
library("remotes")
install_version("SeuratObject", "5.0.2")



Attach the package and use:
library("SeuratObject")
Maintained by
Rahul Satija
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-01-15
Latest Update: 2023-11-17
Description:
Defines S4 classes for single-cell genomic data and associated information, such as dimensionality reduction embeddings, nearest-neighbor graphs, and spatially-resolved coordinates. Provides data access methods and R-native hooks to ensure the Seurat object is familiar to other R users. See Satija R, Farrell J, Gennert D, et al (2015) , Macosko E, Basu A, Satija R, et al (2015) , and Stuart T, Butler A, et al (2019) , Hao Y, Hao S, et al (2021) and Hao Y, et al (2023) for more details.
How to cite:
Rahul Satija (2021). SeuratObject: Data Structures for Single Cell Data. R package version 5.0.2, https://cran.r-project.org/web/packages/SeuratObject. Accessed 18 Feb. 2025.
Previous versions and publish date:
4.0.0 (2021-01-15 09:50), 4.0.1 (2021-05-08 06:50), 4.0.2 (2021-06-09 11:20), 4.0.3 (2021-11-10 23:20), 4.0.4 (2021-11-23 21:00), 4.1.0 (2022-05-01 16:40), 4.1.1 (2022-08-29 21:50), 4.1.2 (2022-09-20 18:30), 4.1.3 (2022-11-07 19:50), 4.1.4 (2023-09-27 00:30), 5.0.0 (2023-10-26 22:30), 5.0.1 (2023-11-17 23:40)
Other packages that cited SeuratObject R package
View SeuratObject citation profile
Other R packages that SeuratObject depends, imports, suggests or enhances
Complete documentation for SeuratObject
Functions, R codes and Examples using the SeuratObject R package
Some associated functions: AddMetaData . Angles . Assay-class . Assay-methods . AssayData . AttachDeps . Boundaries . Cells . CellsByIdentities . CellsByImage . Centroids-class . Centroids-methods . CheckDots . CheckGC . CheckMatrix . Command . CreateAssayObject . CreateCentroids . CreateDimReducObject . CreateFOV . CreateMolecules . CreateSegmentation . CreateSeuratObject . Crop . DefaultAssay . DefaultDimReduc . DefaultFOV . DimReduc-class . DimReduc-methods . Distances . Embeddings . EmptyDF . FOV-class . FOV-methods . FetchData . FilterObjects . GetImage . GetTissueCoordinates . Graph-class . Idents . Images . Index . Indices . IsGlobal . IsMatrixEmpty . IsNamedList . JS . JackStrawData-class . JackStrawData-methods . Key . KeyMixin-class . Loadings . LogMap-class . LogSeuratCommand . MatchCells . Misc . Molecules-class . Molecules-methods . Neighbor-class . Neighbor-methods . ObjectAccess . Overlay . PackageCheck . PolyVtx . Project . Radius . RandomName . RenameAssays . RenameCells . RowMergeSparseMatrices . Segmentation-class . Segmentation-methods . Seurat-class . Seurat-methods . SeuratCommand-class . SeuratCommand-methods . SeuratObject-package . Simplify . SpatialImage-class . SpatialImage-methods . Stdev . Theta . Tool . UpdateSeuratObject . UpdateSlots . VariableFeatures . Version . WhichCells . aggregate . as.Centroids . as.Graph . as.Neighbor . as.Seurat . as.sparse . dot-Contains . dot-DefaultFOV . oldseurat-class . pbmc_small . reexports . s4list . set-if-na . set-if-null . 
Some associated R codes: RcppExports.R . assay.R . centroids.R . command.R . data.R . default.R . dimreduc.R . fov.R . generics.R . graph.R . jackstraw.R . keymixin.R . logmap.R . molecules.R . neighbor.R . segmentation.R . seurat.R . spatial.R . utils.R . zzz.R .  Full SeuratObject package functions and examples
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