Other packages > Find by keyword >

SOMMD  

Self Organising Maps for the Analysis of Molecular Dynamics Data
View on CRAN: Click here


Download and install SOMMD package within the R console
Install from CRAN:
install.packages("SOMMD")

Install from Github:
library("remotes")
install_github("cran/SOMMD")

Install by package version:
library("remotes")
install_version("SOMMD", "0.1.2")



Attach the package and use:
library("SOMMD")
Maintained by
Stefano Motta
[Scholar Profile | Author Map]
First Published: 2024-10-02
Latest Update: 2024-10-02
Description:
Processes data from Molecular Dynamics simulations using Self Organising Maps. Features include the ability to read different input formats. Trajectories can be analysed to identify groups of important frames. Output visualisation can be generated for maps and pathways. Methodological details can be found in Motta S et al (2022) <doi:10.1021/acs.jctc.1c01163>. I/O functions for xtc format files were implemented using the 'xdrfile' library available under open source license. The relevant information can be found in inst/COPYRIGHT.
How to cite:
Stefano Motta (2024). SOMMD: Self Organising Maps for the Analysis of Molecular Dynamics Data. R package version 0.1.2, https://cran.r-project.org/web/packages/SOMMD. Accessed 02 Apr. 2025.
Previous versions and publish date:
No previous versions
Other packages that cited SOMMD R package
View SOMMD citation profile
Other R packages that SOMMD depends, imports, suggests or enhances
Complete documentation for SOMMD
Functions, R codes and Examples using the SOMMD R package
Full SOMMD package functions and examples
Downloads during the last 30 days
03/0303/0403/0503/0603/0703/0803/0903/1003/1103/1203/1303/1403/1503/1603/1703/1803/1903/2003/2103/2203/2303/2403/2503/2603/2703/2803/2903/3003/3104/01Downloads for SOMMD0123456789101112TrendBars

Today's Hot Picks in Authors and Packages

CTShiny  
Interactive Document for Working with Classification Tree Analysis
An interactive document on the topic of classification tree analysis using 'rmarkdown' and 'shiny' ...
Download / Learn more Package Citations See dependency  
geonapi  
'GeoNetwork' API R Interface
Provides an R interface to the 'GeoNetwork' API () allowing ...
Download / Learn more Package Citations See dependency  
pirate  
Generated Effect Modifier
An implementation of the generated effect modifier (GEM) method. This method constructs composite va ...
Download / Learn more Package Citations See dependency  
Maintainer: Zhe Su (view profile)
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
binom  
Binomial Confidence Intervals for Several Parameterizations
Constructs confidence intervals on the probability of success in a binomial experiment via several ...
Download / Learn more Package Citations See dependency  
CodeDepends  
Analysis of R Code for Reproducible Research and Code Comprehension
Tools for analyzing R expressions or blocks of code and determining the dependencies between them. ...
Download / Learn more Package Citations See dependency  

23,990

R Packages

207,311

Dependencies

64,809

Author Associations

23,991

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA