Other packages > Find by keyword >

ReAD  

Powerful Replicability Analysis of Genome-Wide Association Studies
View on CRAN: Click here


Download and install ReAD package within the R console
Install from CRAN:
install.packages("ReAD")

Install from Github:
library("remotes")
install_github("cran/ReAD")

Install by package version:
library("remotes")
install_version("ReAD", "1.0.1")



Attach the package and use:
library("ReAD")
Maintained by
Yan Li
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-06-30
Latest Update: 2023-06-30
Description:
A robust and powerful approach is developed for replicability analysis of two Genome-wide association studies (GWASs) accounting for the linkage disequilibrium (LD) among genetic variants. The LD structure in two GWASs is captured by a four-state hidden Markov model (HMM). The unknowns involved in the HMM are estimated by an efficient expectation-maximization (EM) algorithm in combination with a non-parametric estimation of functions. By incorporating information from adjacent locations via the HMM, this approach identifies the entire clusters of genotype-phenotype associated signals, improving the power of replicability analysis while effectively controlling the false discovery rate.
How to cite:
Yan Li (2023). ReAD: Powerful Replicability Analysis of Genome-Wide Association Studies. R package version 1.0.1, https://cran.r-project.org/web/packages/ReAD. Accessed 28 Aug. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited ReAD R package
View ReAD citation profile
Other R packages that ReAD depends, imports, suggests or enhances
Complete documentation for ReAD
Functions, R codes and Examples using the ReAD R package
Full ReAD package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

spatialCovariance  
Computation of Spatial Covariance Matrices for Data on Rectangles
Functions that compute the spatial covariance matrix for the matern and power classes of spatial mod ...
Download / Learn more Package Citations See dependency  
RGIFT  
Create Quizzes in GIFT Format
Implementation of some functions to create quizzes in the GIFT format. This format is used by sever ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
NPflow  
Bayesian Nonparametrics for Automatic Gating of Flow-Cytometry Data
Dirichlet process mixture of multivariate normal, skew normal or skew t-distributions modeling orie ...
Download / Learn more Package Citations See dependency  
survivalMPLdc  
Penalised Likelihood for Survival Analysis with Dependent Censoring
Fitting Cox proportional hazard model under dependent right censoring using copula and maximum penal ...
Download / Learn more Package Citations See dependency  
shinyFeedback  
Display User Feedback in Shiny Apps
Easily display user feedback in Shiny apps. ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,113

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA