Other packages > Find by keyword >

QTL.gCIMapping  

QTL Genome-Wide Composite Interval Mapping
View on CRAN: Click here


Download and install QTL.gCIMapping package within the R console
Install from CRAN:
install.packages("QTL.gCIMapping")

Install from Github:
library("remotes")
install_github("cran/QTL.gCIMapping")

Install by package version:
library("remotes")
install_version("QTL.gCIMapping", "3.4")



Attach the package and use:
library("QTL.gCIMapping")
Maintained by
Yuanming Zhang
[Scholar Profile | Author Map]
First Published: 2018-04-24
Latest Update: 2022-02-24
Description:
Conduct multiple quantitative trait loci (QTL) and QTL-by-environment interaction (QEI) mapping via ordinary or compressed variance component mixed models with random- or fixed QTL/QEI effects. First, each position on the genome is detected in order to obtain a negative logarithm P-value curve against genome position. Then, all the peaks on each effect (additive or dominant) curve or on each locus curve are viewed as potential main-effect QTLs and QEIs, all their effects are included in a multi-locus model, their effects are estimated by both least angle regression and empirical Bayes (or adaptive lasso) in backcross and F2 populations, and true QTLs and QEIs are identified by likelihood radio test. See Zhou et al. (2022) and Wen et al. (2018) .
How to cite:
Yuanming Zhang (2018). QTL.gCIMapping: QTL Genome-Wide Composite Interval Mapping. R package version 3.4, https://cran.r-project.org/web/packages/QTL.gCIMapping. Accessed 10 Apr. 2025.
Previous versions and publish date:
1.0 (2018-04-24 13:44), 2.0 (2018-04-30 11:19), 3.0 (2018-06-16 09:52), 3.1 (2018-10-17 07:30), 3.2 (2019-11-12 00:50), 3.3.1 (2020-10-12 06:40), 3.3 (2020-05-01 09:20)
Other packages that cited QTL.gCIMapping R package
View QTL.gCIMapping citation profile
Other R packages that QTL.gCIMapping depends, imports, suggests or enhances
Complete documentation for QTL.gCIMapping
Functions, R codes and Examples using the QTL.gCIMapping R package
Some associated functions: DHdata . Dodata . F2data . QTL.gCIMapping . Readdata . WangF . WangS . WenF . WenS . ZhouF . ZhouMethod . ZhouMethod_single_env . markerinsert . 
Some associated R codes: Dodata.R . QTL.gCIMapping.R . RcppExports.R . Readdata.R . WangF.R . ZhouF.R .  Full QTL.gCIMapping package functions and examples
Downloads during the last 30 days
03/1103/1203/1303/1403/1503/1603/1703/1803/1903/2003/2103/2203/2303/2403/2503/2603/2703/2803/2903/3003/3104/0104/0204/0304/0404/0504/0604/0704/0804/09Downloads for QTL.gCIMapping0246810121416182022242628TrendBars

Today's Hot Picks in Authors and Packages

RODBC  
ODBC Database Access
webglobe  
3D Interactive Globes
Displays geospatial data on an interactive 3D globe in the web browser. ...
Download / Learn more Package Citations See dependency  
GRNNs  
General Regression Neural Networks Package
This General Regression Neural Networks Package uses various distance functions. It was motivated b ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
xtermStyle  
Terminal Text Formatting Using Escape Sequences
Can be used for coloring output in terminals. It was developed for the standard Ubuntu terminal but ...
Download / Learn more Package Citations See dependency  
ecochange  
Integrating Ecosystem Remote Sensing Products to Derive EBV Indicators
Essential Biodiversity Variables (EBV) are state variables with dimensions on time, space, and biolo ...
Download / Learn more Package Citations See dependency  

24,012

R Packages

207,311

Dependencies

64,867

Author Associations

24,013

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA