Other packages > Find by keyword >

QTL.gCIMapping  

QTL Genome-Wide Composite Interval Mapping
View on CRAN: Click here


Download and install QTL.gCIMapping package within the R console
Install from CRAN:
install.packages("QTL.gCIMapping")

Install from Github:
library("remotes")
install_github("cran/QTL.gCIMapping")

Install by package version:
library("remotes")
install_version("QTL.gCIMapping", "3.4")



Attach the package and use:
library("QTL.gCIMapping")
Maintained by
Yuanming Zhang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-04-24
Latest Update: 2022-02-24
Description:
Conduct multiple quantitative trait loci (QTL) and QTL-by-environment interaction (QEI) mapping via ordinary or compressed variance component mixed models with random- or fixed QTL/QEI effects. First, each position on the genome is detected in order to obtain a negative logarithm P-value curve against genome position. Then, all the peaks on each effect (additive or dominant) curve or on each locus curve are viewed as potential main-effect QTLs and QEIs, all their effects are included in a multi-locus model, their effects are estimated by both least angle regression and empirical Bayes (or adaptive lasso) in backcross and F2 populations, and true QTLs and QEIs are identified by likelihood radio test. See Zhou et al. (2022) and Wen et al. (2018) .
How to cite:
Yuanming Zhang (2018). QTL.gCIMapping: QTL Genome-Wide Composite Interval Mapping. R package version 3.4, https://cran.r-project.org/web/packages/QTL.gCIMapping. Accessed 21 Dec. 2024.
Previous versions and publish date:
1.0 (2018-04-24 13:44), 2.0 (2018-04-30 11:19), 3.0 (2018-06-16 09:52), 3.1 (2018-10-17 07:30), 3.2 (2019-11-12 00:50), 3.3.1 (2020-10-12 06:40), 3.3 (2020-05-01 09:20)
Other packages that cited QTL.gCIMapping R package
View QTL.gCIMapping citation profile
Other R packages that QTL.gCIMapping depends, imports, suggests or enhances
Complete documentation for QTL.gCIMapping
Functions, R codes and Examples using the QTL.gCIMapping R package
Some associated functions: DHdata . Dodata . F2data . QTL.gCIMapping . Readdata . WangF . WangS . WenF . WenS . ZhouF . ZhouMethod . ZhouMethod_single_env . markerinsert . 
Some associated R codes: Dodata.R . QTL.gCIMapping.R . RcppExports.R . Readdata.R . WangF.R . ZhouF.R .  Full QTL.gCIMapping package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
CIFsmry  
Weighted summary of cumulative incidence functions
Estimate of cumulative incidence function in two samples. Provide weighted summary statistics based ...
Download / Learn more Package Citations See dependency  
SEIRfansy  
Extended Susceptible-Exposed-Infected-Recovery Model
Extended Susceptible-Exposed-Infected-Recovery Model for handling high false negative rate and symp ...
Download / Learn more Package Citations See dependency  
batteryreduction  
An R Package for Data Reduction by Battery Reduction
Battery reduction is a method used in data reduction. It uses Gram-Schmidt orthogonal rotations to f ...
Download / Learn more Package Citations See dependency  
condGEE  
Parameter Estimation in Conditional GEE for Recurrent Event Gap Times
Solves for the mean parameters, the variance parameter, and their asymptotic variance in a condition ...
Download / Learn more Package Citations See dependency  
helda  
Preprocess Data and Get Better Insights from Machine Learning Models
The main focus is on preprocessing and data visualization of machine learning models performances.So ...
Download / Learn more Package Citations See dependency  

23,394

R Packages

201,798

Dependencies

63,416

Author Associations

23,395

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA