Other packages > Find by keyword >

OmicsQC  

Nominating Quality Control Outliers in Genomic Profiling Studies
View on CRAN: Click here


Download and install OmicsQC package within the R console
Install from CRAN:
install.packages("OmicsQC")

Install from Github:
library("remotes")
install_github("cran/OmicsQC")

Install by package version:
library("remotes")
install_version("OmicsQC", "1.1.0")



Attach the package and use:
library("OmicsQC")
Maintained by
Paul C. Boutros
[Scholar Profile | Author Map]
First Published: 2024-03-01
Latest Update: 2024-03-01
Description:
A method that analyzes quality control metrics from multi-sample genomic sequencing studies and nominates poor quality samples for exclusion. Per sample quality control data are transformed into z-scores and aggregated. The distribution of aggregated z-scores are modelled using parametric distributions. The parameters of the optimal model, selected either by goodness-of-fit statistics or user-designation, are used for outlier nomination. Two implementations of the Cosine Similarity Outlier Detection algorithm are provided with flexible parameters for dataset customization.
How to cite:
Paul C. Boutros (2024). OmicsQC: Nominating Quality Control Outliers in Genomic Profiling Studies. R package version 1.1.0, https://cran.r-project.org/web/packages/OmicsQC. Accessed 08 May. 2025.
Previous versions and publish date:
No previous versions
Other packages that cited OmicsQC R package
View OmicsQC citation profile
Other R packages that OmicsQC depends, imports, suggests or enhances
Complete documentation for OmicsQC
Functions, R codes and Examples using the OmicsQC R package
Full OmicsQC package functions and examples
Downloads during the last 30 days
04/0804/0904/1004/1104/1204/1304/1404/1504/1604/1704/1804/1904/2004/2104/2204/2304/2404/2504/2604/2704/2804/2904/3005/0105/0205/0305/0405/0505/06Downloads for OmicsQC02468101214TrendBars

Today's Hot Picks in Authors and Packages

MultiATSM  
Multicountry Term Structure of Interest Rates Models
Estimation routines for several classes of affine term structure of interest rates models. All the m ...
Download / Learn more Package Citations See dependency  
gms  
'GAMS' Modularization Support Package
A collection of tools to create, use and maintain modularized model code written in the modeling la ...
Download / Learn more Package Citations See dependency  
gaussDiff  
Difference measures for multivariate Gaussian probability density functions
A collection difference measures for multivariate Gaussian probability density functions, such as t ...
Download / Learn more Package Citations See dependency  
MXM  
Feature Selection (Including Multiple Solutions) and Bayesian Networks
Many feature selection methods for a wide range of response variables, including minimal, statistica ...
Download / Learn more Package Citations See dependency  
trajr  
Animal Trajectory Analysis
A toolbox to assist with statistical analysis of animal trajectories. It provides simple access to a ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  

24,205

R Packages

207,311

Dependencies

65,312

Author Associations

24,206

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA