Other packages > Find by keyword >

OmicsQC  

Nominating Quality Control Outliers in Genomic Profiling Studies
View on CRAN: Click here


Download and install OmicsQC package within the R console
Install from CRAN:
install.packages("OmicsQC")

Install from Github:
library("remotes")
install_github("cran/OmicsQC")

Install by package version:
library("remotes")
install_version("OmicsQC", "1.1.0")



Attach the package and use:
library("OmicsQC")
Maintained by
Paul C. Boutros
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-03-01
Latest Update: 2024-03-01
Description:
A method that analyzes quality control metrics from multi-sample genomic sequencing studies and nominates poor quality samples for exclusion. Per sample quality control data are transformed into z-scores and aggregated. The distribution of aggregated z-scores are modelled using parametric distributions. The parameters of the optimal model, selected either by goodness-of-fit statistics or user-designation, are used for outlier nomination. Two implementations of the Cosine Similarity Outlier Detection algorithm are provided with flexible parameters for dataset customization.
How to cite:
Paul C. Boutros (2024). OmicsQC: Nominating Quality Control Outliers in Genomic Profiling Studies. R package version 1.1.0, https://cran.r-project.org/web/packages/OmicsQC. Accessed 13 Sep. 2026.
Previous versions and publish date:
1.1.0 (2024-03-01 16:02), (2026-07-09 08:15)
Other packages that cited OmicsQC R package
View OmicsQC citation profile
Other R packages that OmicsQC depends, imports, suggests or enhances
Complete documentation for OmicsQC
Functions, R codes and Examples using the OmicsQC R package
Full OmicsQC package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

tvmComp  
Discounting and Compounding Calculations for Various Scenarios
Functions for compounding and discounting calculations included here serve as a complete reference f ...
Download / Learn more Package Citations See dependency  
saeMSPE  
Computing MSPE Estimates in Small Area Estimation
We describe a new R package entitled 'saeMSPE' for the well-known Fay Herriot model and nested error ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
cmdfun  
Framework for Building Interfaces to Shell Commands
Writing interfaces to command line software is cumbersome. 'cmdfun' provides a framework for buildi ...
Download / Learn more Package Citations See dependency  
oii  
Crosstab and Statistical Tests for OII MSc Stats Course
Provides simple crosstab output with optional statistics (e.g., Goodman-Kruskal Gamma, Somers' d, an ...
Download / Learn more Package Citations See dependency  
TSEwgt  
Total Survey Error Under Multiple, Different Weighting Schemes
Calculates total survey error (TSE) for a survey under multiple, different weighting schemes, using ...
Download / Learn more Package Citations See dependency  

28,565

R Packages

239,283

Dependencies

75,677

Author Associations

28,481

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA