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OmicsQC
View on CRAN: Click
here
Download and install OmicsQC package within the R console
Install from CRAN:
install.packages("OmicsQC")
Install from Github:
library("remotes")
install_github("cran/OmicsQC") Install by package version:
library("remotes")
install_version("OmicsQC", "1.1.0") Attach the package and use:
library("OmicsQC")
Maintained by
Paul C. Boutros
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-03-01
Latest Update: 2024-03-01
Description:
A method that analyzes quality control metrics from multi-sample genomic sequencing studies and nominates poor quality samples for exclusion. Per sample quality control data are transformed into z-scores and aggregated. The distribution of aggregated z-scores are modelled using parametric distributions. The parameters of the optimal model, selected either by goodness-of-fit statistics or user-designation, are used for outlier nomination. Two implementations of the Cosine Similarity Outlier Detection algorithm are provided with flexible parameters for dataset customization.
How to cite:
Paul C. Boutros (2024). OmicsQC: Nominating Quality Control Outliers in Genomic Profiling Studies. R package version 1.1.0, https://cran.r-project.org/web/packages/OmicsQC. Accessed 04 Jul. 2026.
Previous versions and publish date:
1.1.0 (2024-03-01 16:02)
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