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NBBttest
View on CRAN: Click
here
Download and install NBBttest package within the R console
Install from CRAN:
install.packages("NBBttest")
Install from Github:
library("remotes")
install_github("cran/NBBttest")
Install by package version:
library("remotes")
install_version("NBBttest", "1.0.1")
Attach the package and use:
library("NBBttest")
Maintained by
Yuan-De Tan
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-06-25
Latest Update: 2022-05-29
Description:
We constructed 'NBBttest' for identifying genes or RNA isoforms differentially expressed between two conditions on RNA-seq count data. Package 'NBBttest' can perform data quality check, data normalization, differential analysis, annotation and graphic analysis. In differential analysis, 'NBBttest' can identify differentially expressed genes and differential RNA isoforms in alternative splicing sites and alternative polyadenylation sites, differential sgRNA, and differential CRISPR (clustered regularly interspaced short palindromic repeats) screening genes. In graphic analysis, 'NBBttest' provides two types of heatmaps to visualize differential expression at gene or isoform level using z-score and n-score and creates pathway heatmap. 'NBBttest' can plot differentially expressed exons within a specified gene. In addition, 'NBBttest' provides a tool for annotation of genes and exons. The methods used in 'NBBttest' were new statistical methods developed from Tan and others (2015) . The statistical methods are robust and very powerful in identifying genes or RNA isoforms differentially expressed between two conditions in small samples.
How to cite:
Yuan-De Tan (2020). NBBttest: Negative Binomial Beta t-Test. R package version 1.0.1, https://cran.r-project.org/web/packages/NBBttest
Other packages that cited NBBttest R package
View NBBttest citation profile
Other R packages that NBBttest depends,
imports, suggests or enhances
Functions, R codes and Examples using
the NBBttest R package
Some associated functions: DDX39_100 . NBBplot . NBBttest-package . QC . annotat . betaparametVP . betaparametab . betaparametw . betattest . exondata . gbetattest . gtfa . jkttcell . mbetattest . mtpvadjust . myheatmap . myheatmap2 . normalize . oddratio . omega . pathwayHeatmap . pathwy.A.up . pratio . prime3_PRP8_50 . result . sgRNA . simSplicing . simulat . skjt . smbetattest . subdata . upGAm .
Some associated R codes: NBBplot.R . QC.R . annotat.R . betaparametVP.R . betaparametab.R . betaparametw.R . betattest.R . gbetattest.R . mbetattest.R . mtpvadjust.R . myheatmap.R . myheatmap2.R . normalized.R . oddratio.R . omega.R . pathwayHeatmap.R . pratio.R . simulat.R . smbetattest.R . subdata.R . Full NBBttest package functions and examples
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