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MonoPhy
View on CRAN: Click
here
Download and install MonoPhy package within the R console
Install from CRAN:
install.packages("MonoPhy")
Install from Github:
library("remotes")
install_github("cran/MonoPhy") Install by package version:
library("remotes")
install_version("MonoPhy", "1.3.2") Attach the package and use:
library("MonoPhy")
Maintained by
Orlando Schwery
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-10-19
Latest Update: 2024-10-17
Description:
Requires rooted phylogeny as input and creates a table of genera, their monophyly-status, which taxa cause problems in monophyly etc. Different information can be extracted from the output and a plot function allows visualization of the results in a number of ways.
"MonoPhy: a simple R package to find and visualize monophyly issues." Schwery, O. & O'Meara, B.C. (2016) .
How to cite:
Orlando Schwery (2015). MonoPhy: Explore Monophyly of Taxonomic Groups in a Phylogeny. R package version 1.3.2, https://cran.r-project.org/web/packages/MonoPhy. Accessed 06 Mar. 2026.
Previous versions and publish date:
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Other R packages that MonoPhy depends,
imports, suggests or enhances
Complete documentation for MonoPhy
Functions, R codes and Examples using
the MonoPhy R package
Some associated functions: AssessMonophyly . CollapseMonophyletics . GetAncNodes . GetIntruderTaxa . GetResultMonophyly . MonoPhy-package . MonophylyData . PlotMonophyly .
Some associated R codes: AssessMonophyly.R . CollapseMonophyletics.R . GetAncNodes.R . GetIntruderTaxa.R . GetIntruderTips.R . GetOutlierTaxa.R . GetOutlierTips.R . GetResultMonophyly.R . GetSummaryMonophyly.R . PlotMonophyly.R . Full MonoPhy package functions and examples
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