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MoBPS  

Modular Breeding Program Simulator
View on CRAN: Click here


Download and install MoBPS package within the R console
Install from CRAN:
install.packages("MoBPS")

Install from Github:
library("remotes")
install_github("cran/MoBPS")

Install by package version:
library("remotes")
install_version("MoBPS", "1.6.64")



Attach the package and use:
library("MoBPS")
Maintained by
Torsten Pook
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-03-28
Latest Update: 2021-11-09
Description:
Framework for the simulation framework for the simulation of complex breeding programs and compare their economic and genetic impact. The package is also used as the background simulator for our a web-based interface . Associated publication: Pook et al. (2020) .
How to cite:
Torsten Pook (2020). MoBPS: Modular Breeding Program Simulator. R package version 1.6.64, https://cran.r-project.org/web/packages/MoBPS
Previous versions and publish date:
1.4.87 (2020-03-28 16:30), 1.6.54 (2021-08-23 20:40)
Other packages that cited MoBPS R package
View MoBPS citation profile
Other R packages that MoBPS depends, imports, suggests or enhances
Functions, R codes and Examples using the MoBPS R package
Some associated functions: OGC . add.array . add.combi . add.diag . add.founder.kinship . alpha_to_beta . analyze.bv . analyze.population . bit.snps . bit.storing . breeding.diploid . breeding.intern . bv.development.box . bv.development . bv.standardization . calculate.bv . cattle_chip . check.parents . chicken_chip . clean.up . codeOriginsR . combine.traits . compute.costs.cohorts . compute.costs . compute.snps . compute.snps_single . creating.diploid . creating.phenotypic.transform . creating.trait . decodeOriginsR . demiraculix . derive.loop.elements . diag.mobps . edges.fromto . edit_animal . effect.estimate.add . effective.size . epi . ex_json . ex_pop . find.chromo . find.snpbefore . founder.simulation . generation.individual . get.admixture . get.age.point . get.bv . get.bve . get.class . get.cohorts . get.creating.type . get.cullingtime . get.database . get.death.point . get.dendrogram.heatmap . get.dendrogram . get.dendrogram.trait . get.distance . get.effect.freq . get.effective.size . get.geno . get.genotyped . get.genotyped.snp . get.haplo . get.id . get.individual.loc . get.infos . get.map . get.npheno . get.pca . get.pedigree . get.pedigree2 . get.pedigree3 . get.pedmap . get.pheno . get.pheno.off.count . get.pheno.off . get.phylogenetic.tree . get.qtl.effects . get.qtl . get.qtl.variance . get.recombi . get.reliabilities . get.selectionbve . get.selectionindex . get.time.point . get.vcf . group.diff . insert.bve . json.simulation . kinship.development . kinship.emp.fast . kinship.emp . kinship.exp . ld.decay . maize_chip . miesenberger.index . miraculix . mutation.intro . new.base.generation . pedigree.simulation . pedmap.to.phasedbeaglevcf . pig_chip . plot.population . set.class . set.default . sheep_chip . sortd . ssGBLUP . summary.population . vlist . 
Some associated R codes: OGC.R . add.array.R . add.combi.R . add.diag.R . add.founder.kinship.R . analyze.bv.R . analyze.population.R . bitwise.storing.R . breeding.diploid.R . breeding.intern.R . bv.development.R . bv.development.box.R . bv.standardization.R . calculate.bv.R . check.parents.R . clean.up.R . codeOriginsR.R . combine.traits.R . compute.costs.R . compute.costs.cohorts.R . compute.snps.R . creating.diploid.R . creating.phenotypic.transform.R . creating.trait.R . demiraculix.R . derive.loop.elements.R . diag.mobps.R . edges.fromto.R . edit.animal.R . effect.estimate.add.R . effective.size.R . epi.R . example.dataset.R . find.chromo.R . find.snpbefore.R . founder.simulation.R . generation.individual.R . get.admixture.R . get.age.point.R . get.bv.R . get.bve.R . get.class.R . get.cohorts.R . get.creating.type.R . get.cullingtime.R . get.database.R . get.death.point.R . get.dendrogram.R . get.dendrogram.heatmap.R . get.dendrogram.trait.R . get.distance.R . get.effect.freq.R . get.effective.size.R . get.geno.R . get.genotyped.R . get.genotyped.snp.R . get.haplo.R . get.id.R . get.individual.loc.R . get.infos.R . get.map.R . get.npheno.R . get.pca.R . get.pedigree.R . get.pedmap.R . get.pheno.R . get.pheno.off.R . get.pheno.off.count.R . get.phylogenetic.tree.R . get.qtl.R . get.recombi.R . get.reliabilities.R . get.selectionbve.R . get.selectionindex.R . get.time.point.R . get.vcf.R . group.diff.R . insert.bve.R . json.simulation.R . kinship.development.R . kinship.emp.R . kinship.exp.store.R . ld.decay.R . miesenberger.index.R . miraculix.R . mutation.intro.R . new.base.generation.R . pedigree.simulation.R . pedmap.to.phasedbeaglevcf.R . plot.population.R . set.class.R . set.default.R . sortd.R . ssGBLUP.R . startup.R . summary.population.R . vlist.R .  Full MoBPS package functions and examples
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