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MicroNiche  

Microbial Niche Measurements
View on CRAN: Click here


Download and install MicroNiche package within the R console
Install from CRAN:
install.packages("MicroNiche")

Install from Github:
library("remotes")
install_github("cran/MicroNiche")

Install by package version:
library("remotes")
install_version("MicroNiche", "1.0.0")



Attach the package and use:
library("MicroNiche")
Maintained by
Damien Finn
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-01-30
Latest Update: 2020-01-30
Description:
Measures niche breadth and overlap of microbial taxa from large matrices. Niche breadth measurements include Levins' niche breadth (Bn) index, Hurlbert's Bn and Feinsinger's proportional similarity (PS) index. (Feinsinger, P., Spears, E.E., Poole, R.W. (1981) ). Niche overlap measurements include Levin's Overlap (Ludwig, J.A. and Reynolds, J.F. (1988, ISBN:0471832359)) and a Jaccard similarity index of Feinsinger's PS values between taxa pairs, as Proportional Overlap.
How to cite:
Damien Finn (2020). MicroNiche: Microbial Niche Measurements. R package version 1.0.0, https://cran.r-project.org/web/packages/MicroNiche. Accessed 21 Nov. 2024.
Previous versions and publish date:
No previous versions
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View MicroNiche citation profile
Other R packages that MicroNiche depends, imports, suggests or enhances
Complete documentation for MicroNiche
Functions, R codes and Examples using the MicroNiche R package
Some associated functions: MicroNiche-package . df . feinsingers.PS . hurlberts.Bn . levins.Bn . levins.overlap . proportional.overlap . 
Some associated R codes: MicroNiche-internal.R . feinsingers.PS.R . hurlberts.Bn.R . levins.Bn.R . levins.overlap.R . proportional.overlap.R .  Full MicroNiche package functions and examples
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