R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
LoopDetectR
View on CRAN: Click
here
Download and install LoopDetectR package within the R console
Install from CRAN:
install.packages("LoopDetectR")
Install from Github:
library("remotes")
install_github("cran/LoopDetectR")
Install by package version:
library("remotes")
install_version("LoopDetectR", "0.1.2")
Attach the package and use:
library("LoopDetectR")
Maintained by
Katharina Baum
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-07-20
Latest Update: 2020-07-20
Description:
Detect feedback loops (cycles, circuits) between species (nodes) in ordinary differential equation (ODE) models. Feedback loops are paths from a node to itself without visiting any other node twice, and they have important regulatory functions. Loops are reported with their order of participating nodes and their length, and whether the loop is a positive or a negative feedback loop. An upper limit of the number of feedback loops limits runtime (which scales with feedback loop count). Model parametrizations and values of the modelled variables are accounted for. Computation uses the characteristics of the Jacobian matrix as described e.g. in Thomas and Kaufman (2002) . Input can be the Jacobian matrix of the ODE model or the ODE function definition; in the latter case, the Jacobian matrix is determined using 'numDeriv'. Graph-based algorithms from 'igraph' are employed for path detection.
How to cite:
Katharina Baum (2020). LoopDetectR: Comprehensive Feedback Loop Detection in ODE Models. R package version 0.1.2, https://cran.r-project.org/web/packages/LoopDetectR. Accessed 06 Nov. 2024.
Previous versions and publish date:
No previous versions
Other packages that cited LoopDetectR R package
View LoopDetectR citation profile
Other R packages that LoopDetectR depends,
imports, suggests or enhances
Complete documentation for LoopDetectR
Functions, R codes and Examples using
the LoopDetectR R package
Some associated functions: compare_loop_list . find_edge . find_loops . find_loops_noscc . find_loops_vset . func_POSm4 . func_li08 . li08_solution . loop_summary . sort_loop_index .
Some associated R codes: data.R . further_functions.R . loop_detection_functions.R . Full LoopDetectR package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by
helping add
Reviews / comments / questions /suggestions ↴↴↴
Today's Hot Picks in Authors and Packages
maic
A generalised workflow for generation of subject weights to be
used in Matching-Adjusted Indirect C ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Rob Young (view profile)
mailR
Interface to Apache Commons Email to send emails
from R. ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Rahul Premraj (view profile)
ddp
The desirable Dietary Pattern (DDP)/ PPH score
measures the variety of food consumption. The (weigh ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Weksi Budiaji (view profile)
quickcode
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
memoise
Cache the results of a function so that when you
call it again with the same arguments it returns t ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Winston Chang (view profile)
seriation
Infrastructure for ordering objects with an implementation of several
seriation/sequencing/ordinati ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Michael Hahsler (view profile)