R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
LoopDetectR
View on CRAN: Click
here
Download and install LoopDetectR package within the R console
Install from CRAN:
install.packages("LoopDetectR")
Install from Github:
library("remotes")
install_github("cran/LoopDetectR") Install by package version:
library("remotes")
install_version("LoopDetectR", "0.1.2") Attach the package and use:
library("LoopDetectR")
Maintained by
Katharina Baum
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-07-20
Latest Update: 2020-07-20
Description:
Detect feedback loops (cycles, circuits) between species (nodes) in ordinary differential equation (ODE) models. Feedback loops are paths from a node to itself without visiting any other node twice, and they have important regulatory functions. Loops are reported with their order of participating nodes and their length, and whether the loop is a positive or a negative feedback loop. An upper limit of the number of feedback loops limits runtime (which scales with feedback loop count). Model parametrizations and values of the modelled variables are accounted for. Computation uses the characteristics of the Jacobian matrix as described e.g. in Thomas and Kaufman (2002) . Input can be the Jacobian matrix of the ODE model or the ODE function definition; in the latter case, the Jacobian matrix is determined using 'numDeriv'. Graph-based algorithms from 'igraph' are employed for path detection.
How to cite:
Katharina Baum (2020). LoopDetectR: Comprehensive Feedback Loop Detection in ODE Models. R package version 0.1.2, https://cran.r-project.org/web/packages/LoopDetectR. Accessed 05 Aug. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited LoopDetectR R package
View LoopDetectR citation profile
Other R packages that LoopDetectR depends,
imports, suggests or enhances
Complete documentation for LoopDetectR
Functions, R codes and Examples using
the LoopDetectR R package
Some associated functions: compare_loop_list . find_edge . find_loops . find_loops_noscc . find_loops_vset . func_POSm4 . func_li08 . li08_solution . loop_summary . sort_loop_index .
Some associated R codes: data.R . further_functions.R . loop_detection_functions.R . Full LoopDetectR package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
kernelPSI
Different post-selection inference strategies for kernelselection as described in kernelPSI a Post-S ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Lotfi Slim (view profile)
quickcode
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
dhReg
Building and forecasting time series data with multiple seasonality using Dynamic Harmonic Regressio ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Pranay Gaikwad (view profile)
noisyr
Quantifies and removes technical noise from high-throughput
sequencing data. Two approaches are use ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Ilias Moutsopoulos (view profile)
dcov
Efficient methods for computing distance covariance and relevant statistics. See Sz ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Hang Weiqiang (view profile)
28,083
R Packages
239,283
Dependencies
74,457
Author Associations
28,084
Publication Badges
