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IFC  

Tools for Imaging Flow Cytometry
View on CRAN: Click here


Download and install IFC package within the R console
Install from CRAN:
install.packages("IFC")

Install from Github:
library("remotes")
install_github("cran/IFC")

Install by package version:
library("remotes")
install_version("IFC", "0.2.1")



Attach the package and use:
library("IFC")
Maintained by
Yohann Demont
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-07-13
Latest Update: 2023-09-13
Description:
Contains several tools to treat imaging flow cytometry data from 'ImageStream
How to cite:
Yohann Demont (2020). IFC: Tools for Imaging Flow Cytometry. R package version 0.2.1, https://cran.r-project.org/web/packages/IFC. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.0.8 (2020-07-13 17:40), 0.0.9 (2020-07-24 11:52), 0.1.1 (2020-12-18 13:00), 0.1.2 (2021-10-13 22:10), 0.1.5 (2022-05-25 01:40), 0.1.6 (2022-08-22 12:30), 0.1.7 (2022-10-05 13:00), 0.1.8 (2022-11-29 11:30), 0.2.0 (2023-02-13 11:30)
Other packages that cited IFC R package
View IFC citation profile
Other R packages that IFC depends, imports, suggests or enhances
Complete documentation for IFC
Functions, R codes and Examples using the IFC R package
Some associated functions: BatchReport . BatchStatsReport . CreateGraphReport . DisplayGallery . DisplayReport . ExportToBATCH . ExportToDAF . ExportToFCS . ExportToGallery . ExportToNumpy . ExportToReport . ExportToXIF . ExtractFromDAF . ExtractFromFCS . ExtractFromXIF . ExtractImages_toBase64 . ExtractImages_toFile . ExtractImages_toMatrix . ExtractMasks_toMatrix . FCS_merge_dataset . FCS_merge_sample . FCS_to_data . IFC-package . StatsReport . XIFtoTIFF . addScaleBar . addText . adjustGraph . applyGatingStrategy . applyTrans . assert . autoplot . base64_encode . base_axis_constr . base_hist_constr . buildBatch . buildFeature . buildGraph . buildIFD . buildImage . buildMask . buildPopulation . buildRegion . buildStats . calcDensity . checkColor . checkObj . checksumDAF . checksumIFC . checksumXIF . colConv . collapse_raw . computeGamma . convert_spillover . coord_to_px . cpp_M_HSV2RGB . cpp_align . cpp_as_nativeRaster . cpp_assert . cpp_base64_encode . cpp_checkTIFF . cpp_checksum . cpp_cleanse . cpp_computeGamma . cpp_coord_to_px . cpp_crop . cpp_decomp . cpp_draw . cpp_ell_coord . cpp_extract . cpp_fastTAGS . cpp_fast_factor . cpp_fast_listAny . cpp_fast_range . cpp_fast_rowAny . cpp_fast_sample . cpp_getBits . cpp_getTAGS . cpp_get_bytes_order . cpp_getoffsets_noid . cpp_getoffsets_wid . cpp_group_df . cpp_int32_to_uint32 . cpp_int64_to_uint64 . cpp_inv_smoothLinLog . cpp_mark . cpp_mask . cpp_mpfmatch . cpp_normalize . cpp_offset_to_raw . cpp_pnt_in_gate . cpp_raster . cpp_raw_to_offset . cpp_rawdecomp . cpp_replace_non_finite . cpp_resize . cpp_scanFirst . cpp_seqmatch . cpp_smoothLinLog . cpp_transform . cpp_uint32_to_int32 . cpp_uint32_to_raw . cpp_uint64_to_int64 . cpp_v_int32_to_uint32 . cpp_v_int64_to_uint64 . cpp_writeBMP . data_add_features . data_add_graphs . data_add_pop_sample . data_add_pops . data_add_regions . data_modify_pops . data_modify_regions . data_rm_features . data_rm_graphs . data_rm_pops . data_rm_regions . data_to_AST . data_to_DAF . densCols . endPB . escape_entities . expand_list . extractStats . fastAny . fastCbind . featureIFC . feature_namer . fetch_seed . formatn . fromXML2_gating . gen_altnames . getASSIST . getAborted . getFeaturesValues . getFileExt . getFullTag . getIFD . getImagesValues . getInfo . getLuminance . getOffsets . getSTATSREPORT . get_coordmap_adjusted . get_coordmap_raw . get_feat_value . get_pops_stats . get_ylim . group . gseq . hist_constr . inv_colConv . inv_smoothAsinh . inv_smoothLinLog . layoutReport . map_color . map_style . mergeXIF . modifyGamma . myScales . newPB . next_bool . num_to_string . objectCleanse . objectColorize . objectDisplay . objectExtract . objectNormalize . objectParam . objectResize . objectTransform . objectWrite . paletteIFC . pan_hist . pan_key . pan_smooth . parseFCSname . parseTrans . plotGraph . plot_base . plot_lattice . plot_raster . plot_stats . popsCompute . popsCopy . popsGetAffiliation . popsGetLevels . popsGetObjectsIds . popsGetSiblings . popsGetSiblings1 . popsGetSiblings2 . popsNetwork . popsOrderNodes . popsRename . popsRetrieveGraph . popsWithin . pow2 . protectn . pseudo_seed . random_name . rasterplot . readFCS . readGatingML . readGatingStrategy . readIFC . redefine_features_def . redefine_features_def_feat . redefine_features_def_msk_img . redefine_masks . redefine_masks_image . redefine_masks_mask . redefine_obj . remove_ext . rev_string . setPB . smoothAsinh . smoothLinLog . specialr . split_feat . splitf . splitn . splitp . subsetOffsets . subsetXIF . swap_channel . switch_channel . testXIF . texttomatrix . toBIN_features . toBIN_images . toCapFirstOnly . toEllipse . toXML2_boolpop_gs . toXML2_features . toXML2_features_def . toXML2_graphpop_gs . toXML2_graphs . toXML2_graphs_gs . toXML2_images . toXML2_masks . toXML2_pops . toXML2_regions . toXML2_spillover_gs . toXML2_stats . to_list_node . to_xml_list . trunc_string . tryReportFileCreation . type_constr . usedefault_obj . val_constr . validate_bool . whoami . with_seed . writeGatingStrategy . writeIFC . writeIFD . xml_new_node . 
Some associated R codes: DisplayGallery.R . ExportToBATCH.R . ExportToDAF.R . ExportToGallery.R . ExportToNumpy.R . ExportToReport.R . ExportToXIF.R . ExtractFromDAF.R . ExtractFromXIF.R . ExtractImages_toBase64.R . ExtractImages_toFile.R . ExtractImages_toMatrix.R . ExtractMasks_toMatrix.R . GatingML.R . RcppExports.R . XIFtoTIFF.R . addScaleBar.R . addText.R . applyGatingStrategy.R . assert.R . autoplot.R . base64_encode.R . buildBatch.R . buildFeature.R . buildGraph.R . buildImage.R . buildPopulation.R . buildRegion.R . checkColor.R . checkObj.R . checksumDAF.R . checksumIFC.R . checksumXIF.R . data_add_features.R . data_add_graphs.R . data_add_pop_sample.R . data_add_pops.R . data_add_regions.R . data_modify_pops.R . data_modify_regions.R . data_rm_features.R . data_rm_graphs.R . data_rm_pops.R . data_rm_regions.R . data_to_AST.R . data_to_DAF.R . fastAny.R . fastCbind.R . fcs.R . gamma.R . getASSIST.R . getAborted.R . getFeaturesValues.R . getFileExt.R . getFullTag.R . getIFD.R . getImagesValues.R . getInfo.R . getLuminance.R . getOffsets.R . graphs_utils.R . group.R . inv_smoothLinLog.R . mergeXIF.R . objectCleanse.R . objectColorize.R . objectDisplay.R . objectExtract.R . objectNormalize.R . objectParam.R . objectResize.R . objectTransform.R . objectWrite.R . paletteIFC.R . plotGraph.R . popsCompute.R . popsCopy.R . popsGetAffiliation.R . popsGetLevels.R . popsGetObjecstIds.R . popsGetSiblings.R . popsNetwork.R . popsOrderNodes.R . popsRename.R . popsRetrieveGraph.R . popsWithin.R . progress_utils.R . rasterplot.R . readGatingStrategy.R . readIFC.R . redefine_utils.R . seed.R . smoothLinLog.R . stats.R . strings_utils.R . subsetOffsets.R . subsetXIF.R . texttomatrix.R . tiff_utils.R . toBIN_features.R . toBIN_images.R . toXML2_features.R . toXML2_features_def.R . toXML2_graphs.R . toXML2_images.R . toXML2_masks.R . toXML2_pops.R . toXML2_regions.R . trans_utils.R . whoami.R . writeGatingStrategy.R . writeIFC.R . xml_utils.R . zzz.R .  Full IFC package functions and examples
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