R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
Haplin
View on CRAN: Click
here
Download and install Haplin package within the R console
Install from CRAN:
install.packages("Haplin")
Install from Github:
library("remotes")
install_github("cran/Haplin") Install by package version:
library("remotes")
install_version("Haplin", "7.3.2") Attach the package and use:
library("Haplin")
Maintained by
Hakon K. Gjessing
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2009-05-27
Latest Update: 2024-08-20
Description:
Performs genetic association analyses of case-parent triad (trio) data with multiple markers. It can also incorporate complete or incomplete control triads, for instance independent control children. Estimation is based on haplotypes, for instance SNP haplotypes, even though phase is not known from the genetic data. 'Haplin' estimates relative risk (RR + conf.int.) and p-value associated with each haplotype. It uses maximum likelihood estimation to make optimal use of data from triads with missing genotypic data, for instance if some SNPs has not been typed for some individuals. 'Haplin' also allows estimation of effects of maternal haplotypes and parent-of-origin effects, particularly appropriate in perinatal epidemiology. 'Haplin' allows special models, like X-inactivation, to be fitted on the X-chromosome. A GxE analysis allows testing interactions between environment and all estimated genetic effects. The models were originally described in "Gjessing HK and Lie RT. Case-parent triads: Estimating single- and double-dose effects of fetal and maternal disease gene haplotypes. Annals of Human Genetics (2006) 70, pp. 382-396".
How to cite:
Hakon K. Gjessing (2009). Haplin: Analyzing Case-Parent Triad and/or Case-Control Data with SNP Haplotypes. R package version 7.3.2, https://cran.r-project.org/web/packages/Haplin. Accessed 06 Aug. 2026.
Previous versions and publish date:
3.0.1 (2009-05-27 10:59), 3.0.2 (2010-01-10 09:04), 3.5 (2010-05-26 10:46), 4.0 (2012-01-27 12:17), 4.1 (2012-03-16 11:04), 5.0.1 (2013-03-08 17:44), 5.0.2 (2013-03-18 15:49), 5.0 (2013-02-06 14:41), 5.2 (2013-05-02 15:20), 5.3 (2013-05-23 11:10), 5.5 (2015-05-15 21:42), 6.0.1 (2016-05-26 17:44), 6.0 (2016-05-25 11:17), 6.2.0 (2017-02-28 14:47), 6.2.1 (2017-10-18 23:32), 7.0.0 (2018-05-28 00:50), 7.1.0 (2019-04-17 23:30), 7.2.2 (2020-01-07 15:40), 7.2.3 (2020-09-07 08:50), 7.3.0 (2022-05-20 14:00), 7.3.1 (2024-02-08 23:20), (2026-07-09 08:06)
Other packages that cited Haplin R package
View Haplin citation profile
Other R packages that Haplin depends,
imports, suggests or enhances
Complete documentation for Haplin
Functions, R codes and Examples using
the Haplin R package
Some associated functions: cbindFiles . convertPed . create.missingness.matrix . f.check.unique.ids . f.convert.matrix.ff . f.create.snp.names . f.extract.ff.numeric . f.get.gen.data.cols . finishParallelRun . genDataGetPart . genDataLoad . genDataPreprocess . genDataRead . getChildren . getDyads . getFathers . getFullTriads . getMothers . gxe . hapPower . hapPowerAsymp . hapRelEff . hapRun . hapSim . haplin . haplinSlide . haplinStrat . haptable . initParallelRun . lineByLine . nfam . nindiv . nsnps . output . pJohnson . pQQ . pedToHaplin . plot.haplin . plot.haplinSlide . plot.haplinStrat . plot.haptable . plotPValues . print.haplin . print.summary.haplin . rbindFiles . showGen . showPheno . showSNPnames . snpPos . snpPower . snpSampleSize . suest . summary.haplin . toDataFrame .
Some associated R codes: JohnsonFit.R . as.dframe.R . cbindFiles.R . coef.haplin.R . coef.haptable.R . coef.haptable.hapSlide.R . coef.tri.glm.R . convertPed.R . dframe.R . dumpTab.R . f.EM.missing.R . f.HWE.R . f.HWE.design.R . f.HWE.design0.R . f.HWE0.R . f.QQconf.R . f.Rplot.R . f.a.asymp.R . f.aggregate.R . f.args.from.info.R . f.args.from.info0.R . f.b.asymp.R . f.bdiag.R . f.beta.haplo.freq.asymp.R . f.catch.R . f.catch0.R . f.check.pars.R . f.check.pars0.R . f.check.unique.ids.R . f.coefnames.R . f.compute.effects.R . f.convert.matrix.ff.R . f.create.snp.names.R . f.create.tag.R . f.data.R . f.data.ready.R . f.data0.R . f.debug.pvalues.R . f.design.get.R . f.design.make.R . f.expand.alleles.R . f.extract.ff.numeric.R . f.extract.freq.R . f.fill.effects.R . f.final.loglike.R . f.freq.table.R . f.get.data.R . f.get.gen.data.cols.R . f.get.marker.names.R . f.get.which.gen.el.R . f.get.which.gen.el.names.R . f.grid.asymp.R . f.groupsum.R . f.gwaa.to.ff.R . f.hapArg.R . f.hapSim.R . f.hapTests.R . f.haptable.list.R . f.insert.row.R . f.jackknife.R . f.like.ratio.R . f.make.ff.data.out.R . f.make.index.R . f.make.out.filename.R . f.mat.asymp.R . f.match.R . f.matrix.to.list.R . f.ped.to.mfc.new.R . f.ped.to.mfc0.R . f.plot.effects.R . f.pos.in.grid.R . f.pos.match.R . f.pos.to.haplocomb.R . f.post.chisq.R . f.post.contrasts.R . f.post.diff.R . f.post.poo.diff.R . f.posttest.R . f.posttest.score.R . f.preliminary.freq.R . f.preliminary.freq0.R . f.prep.data.R . f.prep.data.parallel.R . f.prep.dataout.R . f.prep.pedIndex.R . f.prep.reference.R . f.printlist.R . f.prob.R . f.prob.asymp.R . f.rand.geno.R . f.read.data.R . f.redistribute.R . f.repl.thin.R . f.repl.thin0.R . f.scoretest.R . f.sel.haplos.R . f.sel.markers.R . f.sep.data.R . f.sep.data0.R . f.sim.R . f.sort.alleles.R . f.sort.alleles.cc.R . f.sort.alleles.cc0.R . f.sort.alleles0.R . f.split.matrix.R . f.split.vector.R . f.suest.R . f.tri.glm.R . f.var.covar.R . f.var.covar.asymp.R . f.vis.R . f.windows.R . finishParallelRun.R . genDataGetPart.R . genDataLoad.R . genDataPreprocess.R . genDataRead.R . getChildren.R . getDyads_or_Triads.R . getFathers.R . getMothers.R . gxe.R . hapCovar.R . hapPower.R . hapPowerAsymp.R . hapRelEff.R . hapRun.R . hapSim.R . haplin.R . haplin0.R . haplinSlide.R . haplinSlide0.R . haplinStrat.R . haplinStrat0.R . haptable.R . haptable.default.R . haptable.gxe.R . haptable.haplin.R . haptable.haplinSlide.R . haptable.haplinStrat.R . initParallelRun.R . lineByLine.R . lineConvert.R . nfam.R . nindiv.R . nsnps.R . output.R . pQQ.R . pedToHaplin.R . plot.haplin.R . plot.haplinSlide.R . plot.haplinStrat.R . plot.haptable.R . plotPValues.R . postTest.R . print.HWE.test.R . print.gxe.R . print.haplin.R . print.haplin.data.R . print.haplin.ready.R . print.haplinSlide.R . print.haplinStrat.R . print.info.R . print.suest.R . print.summary.haplin.R . print.summary.tri.glm.R . print.tri.glm.R . rbindFiles.R . showGen.R . showPheno.R . showSNPnames.R . snpPos.R . snpPower.R . snpSampleSize.R . suest.R . summary.haplin.R . summary.haplinStrat.R . summary.tri.glm.R . textlabel.R . toDataFrame.R . zzz.R . Full Haplin package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
r2resize
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
TMDb
Provides an R-interface to the TMDb API (see TMDb API on < ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Andrea Capozio (view profile)
lsmeans
Obtain least-squares means for linear, generalized linear,
and mixed models. Compute contrasts or l ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Russell Lenth (view profile)
SAMBA
Health research using data from electronic health records (EHR) has gained
popularity, but miscla ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Alexander Rix (view profile)
RRedshiftSQL
Superclasses 'PostgreSQL' connection to help enable full 'dplyr' functionality on 'Redshift'. ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Michael Treadwell (view profile)
28,083
R Packages
239,283
Dependencies
74,457
Author Associations
28,084
Publication Badges
