Other packages > Find by keyword >

HLAtools  

Toolkit for HLA Immunogenomics
View on CRAN: Click here


Download and install HLAtools package within the R console
Install from CRAN:
install.packages("HLAtools")

Install from Github:
library("remotes")
install_github("cran/HLAtools")

Install by package version:
library("remotes")
install_version("HLAtools", "1.3.0")



Attach the package and use:
library("HLAtools")
Maintained by
Steven Mack
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-07-26
Latest Update: 2024-07-26
Description:
A toolkit for the analysis and management of data for genes in the so-called "Human Leukocyte Antigen" (HLA) region. Functions extract reference data from the Anthony Nolan HLA Informatics Group/ImmunoGeneTics HLA 'GitHub' repository (ANHIG/IMGTHLA) <https://github.com/ANHIG/IMGTHLA>, validate Genotype List (GL) Strings, convert between UNIFORMAT and GL String Code (GLSC) formats, translate HLA alleles and GLSCs across ImmunoPolymorphism Database (IPD) IMGT/HLA Database release versions, identify differences between pairs of alleles at a locus, generate customized, multi-position sequence alignments, trim and convert allele-names across nomenclature epochs, and extend existing data-analysis methods.
How to cite:
Steven Mack (2024). HLAtools: Toolkit for HLA Immunogenomics. R package version 1.3.0, https://cran.r-project.org/web/packages/HLAtools. Accessed 18 Feb. 2025.
Previous versions and publish date:
1.1.1 (2024-07-26 21:40), 1.2.0 (2024-09-02 22:10)
Other packages that cited HLAtools R package
View HLAtools citation profile
Other R packages that HLAtools depends, imports, suggests or enhances
Complete documentation for HLAtools
Functions, R codes and Examples using the HLAtools R package
Full HLAtools package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
MOSS  
Multi-Omic Integration via Sparse Singular Value Decomposition
High dimensionality, noise and heterogeneity among samples and features challenge the omic integrat ...
Download / Learn more Package Citations See dependency  
fclust  
Fuzzy Clustering
Algorithms for fuzzy clustering, cluster validity indices and plots for cluster validity and visuali ...
Download / Learn more Package Citations See dependency  
OptGS  
Near-Optimal Group-Sequential Designs for Continuous Outcomes
Optimal group-sequential designs minimise some function of the expected and maximum sample size whil ...
Download / Learn more Package Citations See dependency  
ppmf  
Read Census Privacy Protected Microdata Files
Implements data processing described in to align modern differentially ...
Download / Learn more Package Citations See dependency  
readxlsb  
Read 'Excel' Binary (.xlsb) Workbooks
Import data from 'Excel' binary (.xlsb) workbooks into R. ...
Download / Learn more Package Citations See dependency  

23,712

R Packages

205,795

Dependencies

64,332

Author Associations

23,631

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA