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HLAtools  

Toolkit for HLA Immunogenomics
View on CRAN: Click here


Download and install HLAtools package within the R console
Install from CRAN:
install.packages("HLAtools")

Install from Github:
library("remotes")
install_github("cran/HLAtools")

Install by package version:
library("remotes")
install_version("HLAtools", "1.11.0")



Attach the package and use:
library("HLAtools")
Maintained by
Steven Mack
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-07-26
Latest Update: 2025-07-21
Description:
A toolkit for the analysis and management of data for genes in the so-called "Human Leukocyte Antigen" (HLA) region. Functions extract reference data from the Anthony Nolan HLA Informatics Group/ImmunoGeneTics HLA 'GitHub' repository (ANHIG/IMGTHLA) <https://github.com/ANHIG/IMGTHLA>, validate Genotype List (GL) Strings, convert between UNIFORMAT and GL String Code (GLSC) formats, translate HLA alleles and GLSCs across ImmunoPolymorphism Database (IPD) IMGT/HLA Database release versions, identify differences between pairs of alleles at a locus, generate customized, multi-position sequence alignments, trim and convert allele-names across nomenclature epochs, and extend existing data-analysis methods.
How to cite:
Steven Mack (2024). HLAtools: Toolkit for HLA Immunogenomics. R package version 1.11.0, https://cran.r-project.org/web/packages/HLAtools. Accessed 27 Oct. 2026.
Previous versions and publish date:
1.1.1 (2024-07-26 21:40), 1.2.0 (2024-09-02 22:10), 1.3.0 (2024-11-14 06:20), 1.4.0 (2025-03-03 23:30), 1.6.2 (2025-05-02 00:40), 1.6.3 (2025-07-21 07:50), (2026-07-22 10:10)
Other packages that cited HLAtools R package
View HLAtools citation profile
Other R packages that HLAtools depends, imports, suggests or enhances
Complete documentation for HLAtools
Functions, R codes and Examples using the HLAtools R package
Full HLAtools package functions and examples
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