Other packages > Find by keyword >

HDStIM  

High Dimensional Stimulation Immune Mapping ('HDStIM')
View on CRAN: Click here


Download and install HDStIM package within the R console
Install from CRAN:
install.packages("HDStIM")

Install from Github:
library("remotes")
install_github("cran/HDStIM")

Install by package version:
library("remotes")
install_version("HDStIM", "0.1.0")



Attach the package and use:
library("HDStIM")
Maintained by
Rohit Farmer
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-06-24
Latest Update: 2022-06-24
Description:
A method for identifying responses to experimental stimulation in mass or flow cytometry that uses high dimensional analysis of measured parameters and can be performed with an end-to-end unsupervised approach. In the context of in vitro stimulation assays where high-parameter cytometry was used to monitor intracellular response markers, using cell populations annotated either through automated clustering or manual gating for a combined set of stimulated and unstimulated samples, 'HDStIM' labels cells as responding or non-responding. The package also provides auxiliary functions to rank intracellular markers based on their contribution to identifying responses and generating diagnostic plots.
How to cite:
Rohit Farmer (2022). HDStIM: High Dimensional Stimulation Immune Mapping ('HDStIM'). R package version 0.1.0, https://cran.r-project.org/web/packages/HDStIM. Accessed 26 Oct. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited HDStIM R package
View HDStIM citation profile
Other R packages that HDStIM depends, imports, suggests or enhances
Complete documentation for HDStIM
Functions, R codes and Examples using the HDStIM R package
Some associated functions: HDStIM . chi11 . marker_ranking_boruta . plot_K_Fisher . plot_exprs . plot_umap . 
Some associated R codes: HDStIM.R . dataDocumentaion.R . marker_ranking_boruta.R . plot_K_Fisher.R . plot_exprs.R . plot_umap.R .  Full HDStIM package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
rts2  
Log-Gaussian Cox Process Models with Approximations
Supports modelling real-time case data to facilitate the real-time surveillance of infectious disea ...
Download / Learn more Package Citations See dependency  
MARSS  
Multivariate Autoregressive State-Space Modeling
The MARSS package provides maximum-likelihood parameter estimation for constrained and unconstraine ...
Download / Learn more Package Citations See dependency  
LSDsensitivity  
Sensitivity Analysis Tools for 'LSD' Simulations
Tools for sensitivity analysis of LSD simulation models. Reads object-oriented data produced by LSD ...
Download / Learn more Package Citations See dependency  
SADEG  
Stability Analysis in Differentially Expressed Genes
We analyzed the nucleotide composition of genes with a special emphasis on stability of DNA sequence ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA