Other packages > Find by keyword >

HDStIM  

High Dimensional Stimulation Immune Mapping ('HDStIM')
View on CRAN: Click here


Download and install HDStIM package within the R console
Install from CRAN:
install.packages("HDStIM")

Install from Github:
library("remotes")
install_github("cran/HDStIM")

Install by package version:
library("remotes")
install_version("HDStIM", "0.1.0")



Attach the package and use:
library("HDStIM")
Maintained by
Rohit Farmer
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-06-24
Latest Update: 2022-06-24
Description:
A method for identifying responses to experimental stimulation in mass or flow cytometry that uses high dimensional analysis of measured parameters and can be performed with an end-to-end unsupervised approach. In the context of in vitro stimulation assays where high-parameter cytometry was used to monitor intracellular response markers, using cell populations annotated either through automated clustering or manual gating for a combined set of stimulated and unstimulated samples, 'HDStIM' labels cells as responding or non-responding. The package also provides auxiliary functions to rank intracellular markers based on their contribution to identifying responses and generating diagnostic plots.
How to cite:
Rohit Farmer (2022). HDStIM: High Dimensional Stimulation Immune Mapping ('HDStIM'). R package version 0.1.0, https://cran.r-project.org/web/packages/HDStIM. Accessed 15 Jul. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited HDStIM R package
View HDStIM citation profile
Other R packages that HDStIM depends, imports, suggests or enhances
Complete documentation for HDStIM
Functions, R codes and Examples using the HDStIM R package
Some associated functions: HDStIM . chi11 . marker_ranking_boruta . plot_K_Fisher . plot_exprs . plot_umap . 
Some associated R codes: HDStIM.R . dataDocumentaion.R . marker_ranking_boruta.R . plot_K_Fisher.R . plot_exprs.R . plot_umap.R .  Full HDStIM package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

footBayes  
Fitting Bayesian and MLE Football Models
This is the first package allowing for the estimation, visualization and prediction of the most wel ...
Download / Learn more Package Citations See dependency  
gscaLCA  
Generalized Structure Component Analysis- Latent Class Analysis & Latent Class Regression
Execute Latent Class Analysis (LCA) and Latent Class Regression (LCR) by using Generalized Structu ...
Download / Learn more Package Citations See dependency  
gamlss.add  
Extra Additive Terms for Generalized Additive Models for Location Scale and Shape
Interface for extra smooth functions including tensor products, neural networks and decision trees. ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
PermAlgo  
Permutational Algorithm to Simulate Survival Data
This version of the permutational algorithm generates a dataset in which event and censoring times ...
Download / Learn more Package Citations See dependency  
binhf  
Haar-Fisz Functions for Binomial Data
Binomial Haar-Fisz transforms for Gaussianization as in Nunes and Nason (2009). ...
Download / Learn more Package Citations See dependency  

27,806

R Packages

239,283

Dependencies

73,837

Author Associations

27,807

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA