Other packages > Find by keyword >

HDStIM  

High Dimensional Stimulation Immune Mapping ('HDStIM')
View on CRAN: Click here


Download and install HDStIM package within the R console
Install from CRAN:
install.packages("HDStIM")

Install from Github:
library("remotes")
install_github("cran/HDStIM")

Install by package version:
library("remotes")
install_version("HDStIM", "0.1.0")



Attach the package and use:
library("HDStIM")
Maintained by
Rohit Farmer
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-06-24
Latest Update: 2022-06-24
Description:
A method for identifying responses to experimental stimulation in mass or flow cytometry that uses high dimensional analysis of measured parameters and can be performed with an end-to-end unsupervised approach. In the context of in vitro stimulation assays where high-parameter cytometry was used to monitor intracellular response markers, using cell populations annotated either through automated clustering or manual gating for a combined set of stimulated and unstimulated samples, 'HDStIM' labels cells as responding or non-responding. The package also provides auxiliary functions to rank intracellular markers based on their contribution to identifying responses and generating diagnostic plots.
How to cite:
Rohit Farmer (2022). HDStIM: High Dimensional Stimulation Immune Mapping ('HDStIM'). R package version 0.1.0, https://cran.r-project.org/web/packages/HDStIM. Accessed 06 Mar. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited HDStIM R package
View HDStIM citation profile
Other R packages that HDStIM depends, imports, suggests or enhances
Complete documentation for HDStIM
Functions, R codes and Examples using the HDStIM R package
Some associated functions: HDStIM . chi11 . marker_ranking_boruta . plot_K_Fisher . plot_exprs . plot_umap . 
Some associated R codes: HDStIM.R . dataDocumentaion.R . marker_ranking_boruta.R . plot_K_Fisher.R . plot_exprs.R . plot_umap.R .  Full HDStIM package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

mlr3viz  
Visualizations for 'mlr3'
Visualization package of the 'mlr3' ecosystem. It features plots for mlr3 objects such as tasks, le ...
Download / Learn more Package Citations See dependency  
EMVS  
The Expectation-Maximization Approach to Bayesian Variable Selection
An efficient expectation-maximization algorithm for fitting Bayesian spike-and-slab regularization p ...
Download / Learn more Package Citations See dependency  
DatabionicSwarm  
Swarm Intelligence for Self-Organized Clustering
Algorithms implementing populations of agents that interact with one another and sense their environ ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
lbfgs  
Limited-memory BFGS Optimization
A wrapper built around the libLBFGS optimization library by Naoaki Okazaki. The lbfgs package implem ...
Download / Learn more Package Citations See dependency  
openxlsx  
Read, Write and Edit xlsx Files
Simplifies the creation of Excel .xlsx files by providing a high level interface to writing, stylin ...
Download / Learn more Package Citations See dependency  

26,264

R Packages

223,360

Dependencies

70,376

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA