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GWASinspector  

Comprehensive and Easy to Use Quality Control of GWAS Results
View on CRAN: Click here


Download and install GWASinspector package within the R console
Install from CRAN:
install.packages("GWASinspector")

Install from Github:
library("remotes")
install_github("cran/GWASinspector")

Install by package version:
library("remotes")
install_version("GWASinspector", "1.7.1")



Attach the package and use:
library("GWASinspector")
Maintained by
Alireza Ani
[Scholar Profile | Author Map]
First Published: 2019-08-02
Latest Update: 2023-09-27
Description:
When evaluating the results of a genome-wide association study (GWAS), it is important to perform a quality control to ensure that the results are valid, complete, correctly formatted, and, in case of meta-analysis, consistent with other studies that have applied the same analysis. This package was developed to facilitate and streamline this process and provide the user with a comprehensive report.
How to cite:
Alireza Ani (2019). GWASinspector: Comprehensive and Easy to Use Quality Control of GWAS Results. R package version 1.7.1, https://cran.r-project.org/web/packages/GWASinspector. Accessed 20 Feb. 2025.
Previous versions and publish date:
1.1.2 (2019-08-02 11:20), 1.2 (2019-09-25 16:30), 1.3.4 (2019-12-01 21:30), 1.4.2 (2020-01-19 18:00), 1.4.3 (2020-02-18 16:50), 1.4.4 (2020-02-25 08:30), 1.4.5 (2020-03-15 08:20), 1.4.6.7 (2020-03-31 19:40), 1.4.6 (2020-03-23 11:40), 1.4.7.1 (2020-05-11 10:50), 1.4.7 (2020-04-22 16:22), 1.4.8.2 (2020-10-01 11:40), 1.4.8 (2020-07-28 11:42), 1.5.1 (2021-02-08 20:20), 1.5.2 (2021-03-22 22:40), 1.5.7.1 (2022-01-16 17:52), 1.5.7.2 (2022-04-27 19:30), 1.6.0 (2022-11-22 14:30), 1.6.1 (2023-01-09 18:33), 1.6.4 (2023-05-15 20:30), 1.6.5 (2023-09-27 22:00)
Other packages that cited GWASinspector R package
View GWASinspector citation profile
Other R packages that GWASinspector depends, imports, suggests or enhances
Complete documentation for GWASinspector
Functions, R codes and Examples using the GWASinspector R package
Some associated functions: GWASinspector . Inspector-class . Study-class . StudyList-class . compare.GWASs . demo.inspector . get.config . get.headerTranslation . manhattan.plot . result.inspector . run.inspector . setup.inspector . system.check . 
Some associated R codes: GWASinspector.R . QQPlotFunction.R . Study.R . aaa.R . alleleMatch.R . altReferenceRelatedFucntions.R . applyHQfilter.R . betaReferenceRelatedFunctions.R . calculationFunctions.R . checkConfigFile.R . class_definition.R . compare_GWASs.R . demoConfig.R . demo_inspector.R . drawPlots.R . effect_size_ref_make.R . effectsizePlotFunction.R . excelReportFunctions.R . fileFunctions.R . getConfig.R . getHeaderTranslation.R . headerRelatedFunctions.R . histPlotFunction.R . loggerFunctions.R . mafPlotFunction.R . manh_plot.R . manhattanPlotFunction.R . multiStudyFunctions.R . multiStudyPlots.R . pValueCorPlot.R . pValueFunctions.R . processColumnNames.R . processColumns.R . processInputFile.R . rSQLiteFunctions.R . referenceRelatedFunctions.R . reportRelatedFunctions.R . result_inspector.R . run_inspector.R . saveFilesFunctions.R . setGraphicDevice.R . setup_inspector.R . studyFunctions.R . suppFunctions.R . system_check.R . terminationFunctions.R . uploadInputFile.R . validate.R . variantMatching.R . variantMatchingFunctions.R . variantModifierFunctions.R . zzz.R .  Full GWASinspector package functions and examples
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