Other packages > Find by keyword >

GOxploreR  

Structural Exploration of the Gene Ontology (GO) Knowledge Base
View on CRAN: Click here


Download and install GOxploreR package within the R console
Install from CRAN:
install.packages("GOxploreR")

Install from Github:
library("remotes")
install_github("cran/GOxploreR")

Install by package version:
library("remotes")
install_version("GOxploreR", "1.2.8")



Attach the package and use:
library("GOxploreR")
Maintained by
Kalifa Manjang
[Scholar Profile | Author Map]
First Published: 2020-11-20
Latest Update: 2023-11-03
Description:
It provides an effective, efficient, and fast way to explore the Gene Ontology (GO). Given a set of genes, the package contains functions to assess the GO and obtain the terms associated with the genes and the levels of the GO terms. The package provides functions for the three different GO ontology. We discussed the methods explicitly in the following article .
How to cite:
Kalifa Manjang (2020). GOxploreR: Structural Exploration of the Gene Ontology (GO) Knowledge Base. R package version 1.2.8, https://cran.r-project.org/web/packages/GOxploreR. Accessed 04 May. 2025.
Previous versions and publish date:
1.1.0 (2020-11-20 10:30), 1.2.0 (2021-05-17 20:10), 1.2.1 (2021-06-07 16:50), 1.2.2 (2021-07-08 17:50), 1.2.3 (2021-10-07 17:40), 1.2.4 (2021-12-10 16:10), 1.2.5 (2022-03-24 16:30), 1.2.6 (2022-04-19 16:02), 1.2.7 (2023-11-03 15:10)
Other packages that cited GOxploreR R package
View GOxploreR citation profile
Other R packages that GOxploreR depends, imports, suggests or enhances
Complete documentation for GOxploreR
Functions, R codes and Examples using the GOxploreR R package
Some associated functions: GO2DecBP . GO2DecCC . GO2DecMF . GO4Organism . GOTermBP2ChildLevel . GOTermBPOnLevel . GOTermCC2ChildLevel . GOTermCCOnLevel . GOTermMF2ChildLevel . GOTermMFOnLevel . GOTermsApp.B . GOTermsApp.C . GOTermsApp.M . Gene2GOTermAndLevel . Gene2GOTermAndLevel_ON . GetDAG . GetLeafNodesBP . GetLeafNodesCC . GetLeafNodesMF . Level2GOTermBP . Level2GOTermCC . Level2GOTermMF . Level2JumpNodeBP . Level2JumpNodeCC . Level2JumpNodeMF . Level2LeafNodeBP . Level2LeafNodeCC . Level2LeafNodeMF . Level2NoLeafNodeBP . Level2NoLeafNodeCC . Level2NoLeafNodeMF . Level2RegularNodeBP . Level2RegularNodeCC . Level2RegularNodeMF . all_terms_level_h2 . degreeDistBP . degreeDistCC . degreeDistMF . distRankingGO . drawGraph . drawGraph4Vis . edgelistBP . edgelistCC . edgelistMF . getGOcategory . getNodeTerms . goterm.org . maxLevelBP . maxLevelCC . maxLevelMF . prioritizedGOTerms . scoreRankingGO . visRDAGBP . visRDAGCC . visRDAGMF . visRsubDAGBP . visRsubDAGCC . visRsubDAGMF . 
Some associated R codes: GO4org.R . GeneGotermAndLevel.R . GeneGotermAndLevelOL.R . JumpNode.R . RegularNode.R . allgotree.R . allterms.R . buildGoTree.R . degreeDistBP.R . degreeDistCC.R . degreeDistMF.R . drawGraph.R . drawGraph4vis.R . edgeListBp.R . edgeListCc.R . edgeListMf.R . goedit.R . gotermlevel.R . gotermlevelcc.R . gotermlevelmf.R . load.R . rankingFun.R . supportedOrganism.R . visdag.R .  Full GOxploreR package functions and examples
Downloads during the last 30 days
04/0404/0504/0604/0704/0804/0904/1004/1104/1204/1304/1404/1504/1604/1704/1804/1904/2004/2104/2204/2304/2404/2504/2604/2704/2804/2904/3005/01Downloads for GOxploreR0102030405060TrendBars

Today's Hot Picks in Authors and Packages

dipw  
Debiased Inverse Propensity Score Weighting
Estimation of the average treatment effect when controlling for high-dimensional confounders using ...
Download / Learn more Package Citations See dependency  
appler  
'Apple App Store' and 'iTunes' Data Extraction
Using 'Apple App Store' web scraping and 'iTunes' API ...
Download / Learn more Package Citations See dependency  
tidyRSS  
Tidy RSS for R
With the objective of including data from RSS feeds into your analysis, 'tidyRSS' parses RSS, Atom ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
aos  
Animate on Scroll Library for 'shiny'
Trigger animation effects on scroll on any HTML element of 'shiny' and 'rmarkdown', such as any tex ...
Download / Learn more Package Citations See dependency  
kutils  
Project Management Tools
Tools for data importation, recoding, and inspection. There are functions to create new project fo ...
Download / Learn more Package Citations See dependency  

24,187

R Packages

207,311

Dependencies

65,312

Author Associations

24,143

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA