Other packages > Find by keyword >

GOxploreR  

Structural Exploration of the Gene Ontology (GO) Knowledge Base
View on CRAN: Click here


Download and install GOxploreR package within the R console
Install from CRAN:
install.packages("GOxploreR")

Install from Github:
library("remotes")
install_github("cran/GOxploreR")

Install by package version:
library("remotes")
install_version("GOxploreR", "1.2.7")



Attach the package and use:
library("GOxploreR")
Maintained by
Kalifa Manjang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-11-20
Latest Update: 2023-11-03
Description:
It provides an effective, efficient, and fast way to explore the Gene Ontology (GO). Given a set of genes, the package contains functions to assess the GO and obtain the terms associated with the genes and the levels of the GO terms. The package provides functions for the three different GO ontology. We discussed the methods explicitly in the following article .
How to cite:
Kalifa Manjang (2020). GOxploreR: Structural Exploration of the Gene Ontology (GO) Knowledge Base. R package version 1.2.7, https://cran.r-project.org/web/packages/GOxploreR. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.1.0 (2020-11-20 10:30), 1.2.0 (2021-05-17 20:10), 1.2.1 (2021-06-07 16:50), 1.2.2 (2021-07-08 17:50), 1.2.3 (2021-10-07 17:40), 1.2.4 (2021-12-10 16:10), 1.2.5 (2022-03-24 16:30), 1.2.6 (2022-04-19 16:02)
Other packages that cited GOxploreR R package
View GOxploreR citation profile
Other R packages that GOxploreR depends, imports, suggests or enhances
Complete documentation for GOxploreR
Functions, R codes and Examples using the GOxploreR R package
Some associated functions: GO2DecBP . GO2DecCC . GO2DecMF . GO4Organism . GOTermBP2ChildLevel . GOTermBPOnLevel . GOTermCC2ChildLevel . GOTermCCOnLevel . GOTermMF2ChildLevel . GOTermMFOnLevel . GOTermsApp.B . GOTermsApp.C . GOTermsApp.M . Gene2GOTermAndLevel . Gene2GOTermAndLevel_ON . GetDAG . GetLeafNodesBP . GetLeafNodesCC . GetLeafNodesMF . Level2GOTermBP . Level2GOTermCC . Level2GOTermMF . Level2JumpNodeBP . Level2JumpNodeCC . Level2JumpNodeMF . Level2LeafNodeBP . Level2LeafNodeCC . Level2LeafNodeMF . Level2NoLeafNodeBP . Level2NoLeafNodeCC . Level2NoLeafNodeMF . Level2RegularNodeBP . Level2RegularNodeCC . Level2RegularNodeMF . all_terms_level_h2 . degreeDistBP . degreeDistCC . degreeDistMF . distRankingGO . drawGraph . drawGraph4Vis . edgelistBP . edgelistCC . edgelistMF . getGOcategory . getNodeTerms . goterm.org . maxLevelBP . maxLevelCC . maxLevelMF . prioritizedGOTerms . scoreRankingGO . visRDAGBP . visRDAGCC . visRDAGMF . visRsubDAGBP . visRsubDAGCC . visRsubDAGMF . 
Some associated R codes: GO4org.R . GeneGotermAndLevel.R . GeneGotermAndLevelOL.R . JumpNode.R . RegularNode.R . allgotree.R . allterms.R . buildGoTree.R . degreeDistBP.R . degreeDistCC.R . degreeDistMF.R . drawGraph.R . drawGraph4vis.R . edgeListBp.R . edgeListCc.R . edgeListMf.R . goedit.R . gotermlevel.R . gotermlevelcc.R . gotermlevelmf.R . load.R . rankingFun.R . supportedOrganism.R . visdag.R .  Full GOxploreR package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

dmlalg  
Double Machine Learning Algorithms
Implementation of double machine learning (DML) algorithms in R, based on Emmenegger and Buehlmann ...
Download / Learn more Package Citations See dependency  
tropAlgebra  
Tropical Algebraic Functions
It includes functions like tropical addition, tropical multiplication for vectors and matrices. In t ...
Download / Learn more Package Citations See dependency  
wordspace  
Distributional Semantic Models in R
An interactive laboratory for research on distributional semantic models ('DSM', see < ...
Download / Learn more Package Citations See dependency  
composits  
Compositional, Multivariate and Univariate Time Series Outlier Ensemble
A compositional multivariate and univariate time series outlier ensemble.It uses the four R packages ...
Download / Learn more Package Citations See dependency  
LOGANTree  
Tree-Based Models for the Analysis of Log Files from Computer-Based Assessments
Enables researchers to model log-file data from computer-based assessments using machine-learning te ...
Download / Learn more Package Citations See dependency  
Maintainer: Qi Qin (view profile)
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

23,394

R Packages

201,798

Dependencies

63,416

Author Associations

23,395

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA