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GOxploreR  

Structural Exploration of the Gene Ontology (GO) Knowledge Base
View on CRAN: Click here


Download and install GOxploreR package within the R console
Install from CRAN:
install.packages("GOxploreR")

Install from Github:
library("remotes")
install_github("cran/GOxploreR")

Install by package version:
library("remotes")
install_version("GOxploreR", "1.2.8")



Attach the package and use:
library("GOxploreR")
Maintained by
Kalifa Manjang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-11-20
Latest Update: 2025-04-05
Description:
It provides an effective, efficient, and fast way to explore the Gene Ontology (GO). Given a set of genes, the package contains functions to assess the GO and obtain the terms associated with the genes and the levels of the GO terms. The package provides functions for the three different GO ontology. We discussed the methods explicitly in the following article .
How to cite:
Kalifa Manjang (2020). GOxploreR: Structural Exploration of the Gene Ontology (GO) Knowledge Base. R package version 1.2.8, https://cran.r-project.org/web/packages/GOxploreR. Accessed 16 Jul. 2026.
Previous versions and publish date:
1.1.0 (2020-11-20 10:30), 1.2.0 (2021-05-17 20:10), 1.2.1 (2021-06-07 16:50), 1.2.2 (2021-07-08 17:50), 1.2.3 (2021-10-07 17:40), 1.2.4 (2021-12-10 16:10), 1.2.5 (2022-03-24 16:30), 1.2.6 (2022-04-19 16:02), 1.2.7 (2023-11-03 15:10), 1.2.8 (2025-04-05 16:20), (2026-07-09 08:05)
Other packages that cited GOxploreR R package
View GOxploreR citation profile
Other R packages that GOxploreR depends, imports, suggests or enhances
Complete documentation for GOxploreR
Functions, R codes and Examples using the GOxploreR R package
Some associated functions: GO2DecBP . GO2DecCC . GO2DecMF . GO4Organism . GOTermBP2ChildLevel . GOTermBPOnLevel . GOTermCC2ChildLevel . GOTermCCOnLevel . GOTermMF2ChildLevel . GOTermMFOnLevel . GOTermsApp.B . GOTermsApp.C . GOTermsApp.M . Gene2GOTermAndLevel . Gene2GOTermAndLevel_ON . GetDAG . GetLeafNodesBP . GetLeafNodesCC . GetLeafNodesMF . Level2GOTermBP . Level2GOTermCC . Level2GOTermMF . Level2JumpNodeBP . Level2JumpNodeCC . Level2JumpNodeMF . Level2LeafNodeBP . Level2LeafNodeCC . Level2LeafNodeMF . Level2NoLeafNodeBP . Level2NoLeafNodeCC . Level2NoLeafNodeMF . Level2RegularNodeBP . Level2RegularNodeCC . Level2RegularNodeMF . all_terms_level_h2 . degreeDistBP . degreeDistCC . degreeDistMF . distRankingGO . drawGraph . drawGraph4Vis . edgelistBP . edgelistCC . edgelistMF . getGOcategory . getNodeTerms . goterm.org . maxLevelBP . maxLevelCC . maxLevelMF . prioritizedGOTerms . scoreRankingGO . visRDAGBP . visRDAGCC . visRDAGMF . visRsubDAGBP . visRsubDAGCC . visRsubDAGMF . 
Some associated R codes: GO4org.R . GeneGotermAndLevel.R . GeneGotermAndLevelOL.R . JumpNode.R . RegularNode.R . allgotree.R . allterms.R . buildGoTree.R . degreeDistBP.R . degreeDistCC.R . degreeDistMF.R . drawGraph.R . drawGraph4vis.R . edgeListBp.R . edgeListCc.R . edgeListMf.R . goedit.R . gotermlevel.R . gotermlevelcc.R . gotermlevelmf.R . load.R . rankingFun.R . supportedOrganism.R . visdag.R .  Full GOxploreR package functions and examples
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