Other packages > Find by keyword >

GHap  

Genome-Wide Haplotyping
View on CRAN: Click here


Download and install GHap package within the R console
Install from CRAN:
install.packages("GHap")

Install from Github:
library("remotes")
install_github("cran/GHap")

Install by package version:
library("remotes")
install_version("GHap", "3.0.0")



Attach the package and use:
library("GHap")
Maintained by
Yuri Tani Utsunomiya
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-05-02
Latest Update: 2025-09-01
Description:
Haplotype calling from phased marker data. Given user-defined haplotype blocks (HapBlock), the package identifies the different haplotype alleles (HapAllele) present in the data and scores sample haplotype allele genotypes (HapGenotype) based on HapAllele dose (i.e. 0, 1 or 2 copies). The output is not only useful for analyses that can handle multi-allelic markers, but is also conveniently formatted for existing pipelines intended for bi-allelic markers. The package was first described in Bioinformatics by Utsunomiya et al. (2016, ). Since the v2 release, the package provides functions for unsupervised and supervised detection of ancestry tracks. The methods implemented in these functions were described in an article published in Methods in Ecology and Evolution by Utsunomiya et al. (2020, ). The source code for v3 was modified for improved performance and inclusion of new functionality, including analysis of unphased data, runs of homozygosity, sampling methods for virtual gamete mating, mixed model fitting and GWAS.
How to cite:
Yuri Tani Utsunomiya (2016). GHap: Genome-Wide Haplotyping. R package version 3.0.0, https://cran.r-project.org/web/packages/GHap. Accessed 05 Aug. 2026.
Previous versions and publish date:
1.2.0 (2016-05-02 13:30), 1.2.1 (2016-06-10 23:28), 1.2.2 (2017-02-18 21:22), 2.0.0 (2020-09-21 10:50), 3.0.0 (2022-07-01 23:50), (2026-07-09 08:05)
Other packages that cited GHap R package
View GHap citation profile
Other R packages that GHap depends, imports, suggests or enhances
Complete documentation for GHap
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

dhReg  
Dynamic Harmonic Regression
Building and forecasting time series data with multiple seasonality using Dynamic Harmonic Regressio ...
Download / Learn more Package Citations See dependency  
dcov  
A Fast Implementation of Distance Covariance
Efficient methods for computing distance covariance and relevant statistics. See Sz ...
Download / Learn more Package Citations See dependency  
noisyr  
Noise Quantification in High Throughput Sequencing Output
Quantifies and removes technical noise from high-throughput sequencing data. Two approaches are use ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
kernelPSI  
Post-Selection Inference for Nonlinear Variable Selection
Different post-selection inference strategies for kernelselection as described in kernelPSI a Post-S ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA