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DNAmotif
View on CRAN: Click
here
Download and install DNAmotif package within the R console
Install from CRAN:
install.packages("DNAmotif")
Install from Github:
library("remotes")
install_github("cran/DNAmotif")
Install by package version:
library("remotes")
install_version("DNAmotif", "0.1.1")
Attach the package and use:
library("DNAmotif")
Maintained by
Subham Ghosh
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-06-04
Latest Update: 2024-06-04
Description:
Motifs within biological sequences show a significant role. This package utilizes a user-defined threshold value (window size and similarity) to create consensus segments or motifs through local alignment of dynamicprogramming with gap and it calculates the frequency of each identified motif, offering a detailed view of their prevalence within the dataset. It allows for thorough exploration and understanding of sequence patterns and their biological importance.
How to cite:
Subham Ghosh (2024). DNAmotif: DNA Sequence Motifs. R package version 0.1.1, https://cran.r-project.org/web/packages/DNAmotif. Accessed 06 Oct. 2024.
Previous versions and publish date:
0.1.0 (2024-06-04 11:44)
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