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Cyclops  

Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis
View on CRAN: Click here


Download and install Cyclops package within the R console
Install from CRAN:
install.packages("Cyclops")

Install from Github:
library("remotes")
install_github("cran/Cyclops")

Install by package version:
library("remotes")
install_version("Cyclops", "3.5.0")



Attach the package and use:
library("Cyclops")
Maintained by
Marc A. Suchard
[Scholar Profile | Author Map]
First Published: 2016-08-01
Latest Update: 2023-10-31
Description:
This model fitting tool incorporates cyclic coordinate descent and majorization-minimization approaches to fit a variety of regression models found in large-scale observational healthcare data. Implementations focus on computational optimization and fine-scale parallelization to yield efficient inference in massive datasets. Please see: Suchard, Simpson, Zorych, Ryan and Madigan (2013) .
How to cite:
Marc A. Suchard (2016). Cyclops: Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis. R package version 3.5.0, https://cran.r-project.org/web/packages/Cyclops. Accessed 10 Jan. 2025.
Previous versions and publish date:
1.2.0 (2016-08-01 20:41), 1.2.2 (2016-10-06 19:15), 1.3.0 (2017-08-24 00:26), 1.3.2 (2018-05-04 05:12), 1.3.4 (2018-06-15 17:50), 2.0.0 (2018-09-19 00:00), 2.0.1 (2018-09-23 15:30), 2.0.2 (2019-03-17 15:53), 2.0.3 (2020-04-11 18:20), 3.0.0 (2020-06-06 01:00), 3.1.0 (2020-11-05 19:40), 3.1.1 (2021-03-23 21:40), 3.1.2 (2021-06-17 00:10), 3.2.0 (2022-07-01 01:50), 3.2.1 (2022-08-10 17:50), 3.3.0 (2023-04-05 17:53), 3.3.1 (2023-04-11 16:10), 3.4.0 (2023-10-31 01:50), 3.4.1 (2024-06-06 18:40)
Other packages that cited Cyclops R package
View Cyclops citation profile
Other R packages that Cyclops depends, imports, suggests or enhances
Complete documentation for Cyclops
Functions, R codes and Examples using the Cyclops R package
Some associated functions: Multitype . aconfint . appendSqlCyclopsData . coef.cyclopsFit . confint.cyclopsFit . convertToCyclopsData . convertToCyclopsVariance . convertToGlmnetLambda . coverage . createAutoGridCrossValidationControl . createControl . createCyclopsData . createNonSeparablePrior . createParameterizedPrior . createPrior . cyclops . finalizeSqlCyclopsData . fitCyclopsModel . fitCyclopsSimulation . getCovariateIds . getCovariateTypes . getCrossValidationInfo . getCyclopsPredictiveLogLikelihood . getCyclopsProfileLogLikelihood . getFineGrayWeights . getFloatingPointSize . getHyperParameter . getNumberOfCovariates . getNumberOfRows . getNumberOfStrata . getNumberOfTypes . getSEs . getUnivariableCorrelation . getUnivariableSeparability . isInitialized . logLik.cyclopsFit . meanLinearPredictor . mse . oxford . plotCyclopsSimulationFit . predict.cyclopsFit . print.cyclopsData . print.cyclopsFit . printMatrixMarket . readCyclopsData . reduce . simulateCyclopsData . summary.cyclopsData . survfit.cyclopsFit . vcov.cyclopsFit . 
Some associated R codes: CrossValidationControl.R . DataManagement.R . ExampleData.R . GetFrineGrayWeights.R . ModelFit.R . Multitype.R . NewDataConversion.R . PackageMaintenance.R . ParameterizedPrior.R . Predict.R . RcppExports.R . Simulation.R . SpecialPriors.R . Survfit.R . cyclops.R .  Full Cyclops package functions and examples
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