R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
CAESAR.Suite
View on CRAN: Click
here
Download and install CAESAR.Suite package within the R console
Install from CRAN:
install.packages("CAESAR.Suite")
Install from Github:
library("remotes")
install_github("cran/CAESAR.Suite")
Install by package version:
library("remotes")
install_version("CAESAR.Suite", "0.1.0")
Attach the package and use:
library("CAESAR.Suite")
Maintained by
Xiao Zhang
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-09-16
Latest Update: 2024-09-16
Description:
Biotechnology in spatial omics has advanced rapidly over the past few years, enhancing both throughput and resolution. However, existing annotation pipelines in spatial omics predominantly rely on clustering methods, lacking the flexibility to integrate extensive annotated information from single-cell RNA sequencing (scRNA-seq) due to discrepancies in spatial resolutions, species, or modalities. Here we introduce the CAESAR suite, an open-source software package that provides image-based spatial co-embedding of locations and genomic features. It uniquely transfers labels from scRNA-seq reference, enabling the annotation of spatial omics datasets across different technologies, resolutions, species, and modalities, based on the conserved relationship between signature genes and cells/locations at an appropriate level of granularity. Notably, CAESAR enriches location-level pathways, allowing for the detection of gradual biological pathway activation within spatially defined domain types. More details on the methods related to our paper currently under submission. A full reference to the paper will be provided in future versions once the paper is published.
How to cite:
Xiao Zhang (2024). CAESAR.Suite: CAESAR: a Cross-Technology and Cross-Resolution Framework for Spatial Omics Annotation. R package version 0.1.0, https://cran.r-project.org/web/packages/CAESAR.Suite. Accessed 28 Sep. 2024.
Previous versions and publish date:
No previous versions
Other packages that cited CAESAR.Suite R package
View CAESAR.Suite citation profile
Other R packages that CAESAR.Suite depends,
imports, suggests or enhances
Complete documentation for CAESAR.Suite
Functions, R codes and Examples using
the CAESAR.Suite R package
Full CAESAR.Suite package
functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by
helping add
Reviews / comments / questions /suggestions ↴↴↴
Today's Hot Picks in Authors and Packages
mhtboot
A framework for multiple hypothesis testing based on distribution
of p values. It is well known tha ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Abhirup Mallik (view profile)
baseballr
Provides numerous utilities for acquiring and analyzing
baseball data from online sources such as ' ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Saiem Gilani (view profile)
quickcode
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
plm
A set of estimators for models and (robust) covariance matrices, and tests for panel data
econometr ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Kevin Tappe (view profile)
mbRes
Summarize multiple biomarker responses of aquatic organisms to
contaminants using Cliff ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Duy Nghia Pham (view profile)
semTable
For confirmatory factor analysis ('CFA') and structural equation
models ('SEM') estimated with the ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Paul Johnson (view profile)