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BeviMed
View on CRAN: Click
here
Download and install BeviMed package within the R console
Install from CRAN:
install.packages("BeviMed")
Install from Github:
library("remotes")
install_github("cran/BeviMed")
Install by package version:
library("remotes")
install_version("BeviMed", "5.10")
Attach the package and use:
library("BeviMed")
Maintained by
Daniel Greene
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.BeviMed . BeviMed citation info . BeviMed results . BeviMed.pdf . BeviMed Introduction . BeviMed with VCFs . BeviMed Guide . BeviMed_5.10.tar.gz . BeviMed_5.10.zip . BeviMed_5.10.zip . BeviMed_5.10.zip . BeviMed_5.10.tgz . BeviMed_5.10.tgz . BeviMed_5.10.tgz . BeviMed_5.10.tgz . BeviMed_5.10.tgz . BeviMed_5.10.tgz . BeviMed archive . https://CRAN.R-project.org/package=BeviMed .
First Published: 2016-05-03
Latest Update: 2021-01-31
Description:
A fast integrative genetic association test for rare diseases based on a model for disease status given allele counts at rare variant sites. Probability of association, mode of inheritance and probability of pathogenicity for individual variants are all inferred in a Bayesian framework - 'A Fast Association Test for Identifying Pathogenic Variants Involved in Rare Diseases', Greene et al 2017 .
How to cite:
Daniel Greene (2016). BeviMed: Bayesian Evaluation of Variant Involvement in Mendelian Disease. R package version 5.10, https://cran.r-project.org/web/packages/BeviMed. Accessed 01 Apr. 2025.
Previous versions and publish date:
Other packages that cited BeviMed R package
View BeviMed citation profile
Other R packages that BeviMed depends,
imports, suggests or enhances
Complete documentation for BeviMed
Functions, R codes and Examples using
the BeviMed R package
Some associated functions: BeviMed-package . CI_gamma1_evidence . bevimed . bevimed_m . bevimed_polytomous . call_cpp . conditional_prob_pathogenic . expected_explained . explaining_variants . extract_conditional_prob_pathogenic . extract_expected_explained . extract_explaining_variants . extract_gamma1_evidence . extract_prob_association . extract_prob_pathogenic . gamma0_evidence . gamma1_evidence . log_BF . print.BeviMed . print.BeviMed_m . print.BeviMed_summary . prob_association . prob_association_m . prob_pathogenic . stack_BeviMeds . stop_chain . subset_variants . sum_ML_over_PP . summary.BeviMed . summary.BeviMed_m . tune_proposal_sds . tune_temperatures .
Some associated R codes: RcppExports.R . convenience.R . functions.R . generics.R . Full BeviMed package functions and examples
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