Other packages > Find by keyword >

AutoPipe  

Automated Transcriptome Classifier Pipeline: Comprehensive Transcriptome Analysis
View on CRAN: Click here


Download and install AutoPipe package within the R console
Install from CRAN:
install.packages("AutoPipe")

Install from Github:
library("remotes")
install_github("cran/AutoPipe")

Install by package version:
library("remotes")
install_version("AutoPipe", "0.1.6")



Attach the package and use:
library("AutoPipe")
Maintained by
Karam Daka
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-02-27
Latest Update: 2019-02-27
Description:
An unsupervised fully-automated pipeline for transcriptome analysis or a supervised option to identify characteristic genes from predefined subclasses. We rely on the 'pamr' clustering algorithm to cluster the Data and then draw a heatmap of the clusters with the most significant genes and the least significant genes according to the 'pamr' algorithm. This way we get easy to grasp heatmaps that show us for each cluster which are the clusters most defining genes.
How to cite:
Karam Daka (2019). AutoPipe: Automated Transcriptome Classifier Pipeline: Comprehensive Transcriptome Analysis. R package version 0.1.6, https://cran.r-project.org/web/packages/AutoPipe
Previous versions and publish date:
No previous versions
Other packages that cited AutoPipe R package
View AutoPipe citation profile
Other R packages that AutoPipe depends, imports, suggests or enhances
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

CirclesIntersections  
Algorithm for Computation of the Intersection Areas of N Circles
Implementation of Librino, Levorato, and Zorzi (2014) algorithm for computat ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resizer for Images, Tables and Fancy Resizable Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
exif  
Read EXIF Metadata from JPEGs
Extracts Exchangeable Image File Format (EXIF) metadata, such as camera make and model, ISO speed an ...
Download / Learn more Package Citations See dependency  
tabularaster  
Tidy Tools for 'Raster' Data
Facilities to work with vector and raster data in efficient repeatable and systematic work flow. M ...
Download / Learn more Package Citations See dependency  
psoptim  
Particle Swarm Optimization
Particle swarm optimization - a basic variant. ...
Download / Learn more Package Citations See dependency  
mipplot  
An Open-Source Tool for Visualization of Climate Mitigation Scenarios
Generic functions to produce area/bar/box/line plots of data following IAMC (Integrated Assessment M ...
Download / Learn more Package Citations See dependency  

22,114

R Packages

188,080

Dependencies

55,244

Author Associations

22,115

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net. Contact Us / Suggestions / Concerns