Other packages > Find by keyword >

AFM  

Atomic Force Microscope Image Analysis
View on CRAN: Click here


Download and install AFM package within the R console
Install from CRAN:
install.packages("AFM")

Install from Github:
library("remotes")
install_github("cran/AFM")

Install by package version:
library("remotes")
install_version("AFM", "2.0")



Attach the package and use:
library("AFM")
Maintained by
Mathieu Beauvais
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-10-29
Latest Update:
Description:
Provides Atomic Force Microscope images analysis such as Gaussian mixes identification, Power Spectral Density, roughness against lengthscale, experimental variogram and variogram models, fractal dimension and scale, 2D network analysis. The AFM images can be exported to STL format for 3D printing.
How to cite:
Mathieu Beauvais (2015). AFM: Atomic Force Microscope Image Analysis. R package version 2.0, https://cran.r-project.org/web/packages/AFM. Accessed 06 Aug. 2026.
Previous versions and publish date:
1.0.0 (2015-10-29 15:36), 1.1.0 (2015-12-01 16:17), 1.2.0 (2016-02-26 23:23), 1.2.1 (2016-04-12 00:57), 1.2.2 (2016-09-01 01:33), 1.2.4 (2018-04-28 08:21), 1.2.6 (2019-06-08 09:40), 2.0 (2020-10-07 10:00), (2026-07-09 07:56)
Other packages that cited AFM R package
View AFM citation profile
Other R packages that AFM depends, imports, suggests or enhances
Complete documentation for AFM
Functions, R codes and Examples using the AFM R package
Some associated functions: AFM . AFMFractalDimensionAnalyser-getFractalDimensions . AFMImage-class . AFMImage-extractAFMImage . AFMImage-filterAFMImage . AFMImage-getHolesStatistics . AFMImage-importFromNanoscope . AFMImage-invertBinaryAFMImage . AFMImage-isBinary . AFMImage-makeBinaryAFMImage . AFMImage-multiplyHeightsAFMImage . AFMImage-sampleAFMImage . AFMImage-saveOnDisk . AFMImage-simplifyAFMImage . AFMImage3DModelAnalysis-class . AFMImageAnalyser-class-initialize . AFMImageAnalyser-class . AFMImageCollagenNetwork . AFMImageFractalDimensionMethod-class . AFMImageFractalDimensionsAnalysis-class . AFMImageGaussianMixAnalysis-class . AFMImageNetworksAnalysis-class . AFMImageOfAluminiumInterface . AFMImageOfNormallyDistributedHeights . AFMImageOfOnePeak . AFMImageOfRegularPeaks . AFMImagePSDAnalysis-class . AFMImagePSDSlopesAnalysis-class . AFMImageVariogramAnalyser-calculateDirectionalVariograms . AFMImageVariogramAnalyser-calculateOmnidirectionalVariogram . AFMImageVariogramAnalyser-getAutomaticWidthForVariogramCalculation . AFMImageVariogramAnalysis-class . AFMImageVariogramAnalysis-evaluateVariogramModels-method . AFMImageVariogramAnalysis-getDTModelEvaluation-method . AFMImageVariogramAnalysis-getDTModelSillRange-method . AFMImageVariogramAnalysis-updateProgress-method . AFMImageVariogramModel-class . AFMVariogramAnalyser-getSpplotFromAFMImage . AFMVariogramAnalyser-saveSpplotFromAFMImage . AreNodesConnected . PSD1DAgainstFrequency-methods . PSD2DAgainstFrequency-methods . RoughnessByLengthScale-methods . addNode . analyse . calculate3DModel-methods . calculateGaussianMixture . calculateHolesCharacteristics . calculateIgraph . calculateNetworkParameters . calculateNetworkSkeleton . calculateNetworks-methods . calculatePhysicalDistanceFromPath . calculateShortestPaths . canBeRemoved . checkIsotropy . checkNormality . createGraph . displayColoredNetworkWithVerticesSize . displayHolesIn3D . displayIn3D . displaygridIgraphPlot . displaygridIgraphPlotFromEdges . dnormalmix . existsEdge . existsSegment . exportToSTL . fusionCloseNodes . generateAFMImageReport . generateCheckReport . generatePolygonEnvelope . generateReport . generateReportFromNanoscopeImageDirectory . get3DImageFullfilename . getAllPointsToRemove . getAngle . getAutoIntersectionForOmnidirectionalVariogram . getAutoIntersectionForRoughnessAgainstLengthscale . getBresenham2DSegment . getCircleSpatialPoints . getCoordinatesFromVertexId . getIntersectionForRoughnessAgainstLengthscale . getIntersectionPointWithBorder . getListOfDiameters . getLogLogOmnidirectionalSlopeGraph . getMaxCircleMatrix . getNetworkGridLayout . getNetworkParameters-methods . getNyquistSpatialFrequency-methods . getPaddedAFMImage . getRoughnessParameters-methods . getSurroundingVertexesList . getTopologyAFMImage . getTriangle . getVertexId . gridIgraphPlot . identifyEdgesFromCircles . identifyIsolatedNodes . identifyMaxCircleRadius . identifyNodesAndEdges . identifyNodesWithCircles . isAdjacentToBetterVertex . isAngleBetweenEdgesAlwaysSuperiorToMinAngle . loglike.normalmix . omniVariogramSlopeAnalysis-class . performAllPSDCalculation . performGaussianMixCalculation . pnormmix . printVariogramModelEvaluations . putAnalysisOnDisk-methods . putImagesFromAnalysisOnDisk . removeLonguestEdge . removeNode . runAFMApp . saveOnDiskIntersectionForRoughnessAgainstLengthscale . shiftFFT2D . shiftedPSDuv . simplifyNetwork . thinImage . totalRMSRoughness . transformAFMImageForNetworkAnalysis-methods . 
Some associated R codes: AFM3DPrinter.R . AFMFractalDimensionAnalyser.R . AFMGaussianMixAnalyser.R . AFMImage.R . AFMImageAnalyser.R . AFMNetworksAnalyser.R . AFMPSDAnalyser.R . AFMReportMaker.R . AFMVariogramAnalyser.R . pkgname.R . runAFMApp.R .  Full AFM package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

TMDb  
Access to TMDb API
Provides an R-interface to the TMDb API (see TMDb API on < ...
Download / Learn more Package Citations See dependency  
lsmeans  
Least-Squares Means
Obtain least-squares means for linear, generalized linear, and mixed models. Compute contrasts or l ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
SAMBA  
Selection and Misclassification Bias Adjustment for Logistic Regression Models
Health research using data from electronic health records (EHR) has gained popularity, but miscla ...
Download / Learn more Package Citations See dependency  
RRedshiftSQL  
R Interface to the 'Redshift' Database
Superclasses 'PostgreSQL' connection to help enable full 'dplyr' functionality on 'Redshift'. ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA