Other packages > Find by keyword >

AFM  

Atomic Force Microscope Image Analysis
View on CRAN: Click here


Download and install AFM package within the R console
Install from CRAN:
install.packages("AFM")

Install from Github:
library("remotes")
install_github("cran/AFM")

Install by package version:
library("remotes")
install_version("AFM", "2.0")



Attach the package and use:
library("AFM")
Maintained by
Mathieu Beauvais
[Scholar Profile | Author Map]
First Published: 2015-10-29
Latest Update: 2020-10-07
Description:
Provides Atomic Force Microscope images analysis such as Gaussian mixes identification, Power Spectral Density, roughness against lengthscale, experimental variogram and variogram models, fractal dimension and scale, 2D network analysis. The AFM images can be exported to STL format for 3D printing.
How to cite:
Mathieu Beauvais (2015). AFM: Atomic Force Microscope Image Analysis. R package version 2.0, https://cran.r-project.org/web/packages/AFM. Accessed 01 May. 2025.
Previous versions and publish date:
1.0.0 (2015-10-29 15:36), 1.1.0 (2015-12-01 16:17), 1.2.0 (2016-02-26 23:23), 1.2.1 (2016-04-12 00:57), 1.2.2 (2016-09-01 01:33), 1.2.4 (2018-04-28 08:21), 1.2.6 (2019-06-08 09:40)
Other packages that cited AFM R package
View AFM citation profile
Other R packages that AFM depends, imports, suggests or enhances
Complete documentation for AFM
Functions, R codes and Examples using the AFM R package
Some associated functions: AFM . AFMFractalDimensionAnalyser-getFractalDimensions . AFMImage-class . AFMImage-extractAFMImage . AFMImage-filterAFMImage . AFMImage-getHolesStatistics . AFMImage-importFromNanoscope . AFMImage-invertBinaryAFMImage . AFMImage-isBinary . AFMImage-makeBinaryAFMImage . AFMImage-multiplyHeightsAFMImage . AFMImage-sampleAFMImage . AFMImage-saveOnDisk . AFMImage-simplifyAFMImage . AFMImage3DModelAnalysis-class . AFMImageAnalyser-class-initialize . AFMImageAnalyser-class . AFMImageCollagenNetwork . AFMImageFractalDimensionMethod-class . AFMImageFractalDimensionsAnalysis-class . AFMImageGaussianMixAnalysis-class . AFMImageNetworksAnalysis-class . AFMImageOfAluminiumInterface . AFMImageOfNormallyDistributedHeights . AFMImageOfOnePeak . AFMImageOfRegularPeaks . AFMImagePSDAnalysis-class . AFMImagePSDSlopesAnalysis-class . AFMImageVariogramAnalyser-calculateDirectionalVariograms . AFMImageVariogramAnalyser-calculateOmnidirectionalVariogram . AFMImageVariogramAnalyser-getAutomaticWidthForVariogramCalculation . AFMImageVariogramAnalysis-class . AFMImageVariogramAnalysis-evaluateVariogramModels-method . AFMImageVariogramAnalysis-getDTModelEvaluation-method . AFMImageVariogramAnalysis-getDTModelSillRange-method . AFMImageVariogramAnalysis-updateProgress-method . AFMImageVariogramModel-class . AFMVariogramAnalyser-getSpplotFromAFMImage . AFMVariogramAnalyser-saveSpplotFromAFMImage . AreNodesConnected . PSD1DAgainstFrequency-methods . PSD2DAgainstFrequency-methods . RoughnessByLengthScale-methods . addNode . analyse . calculate3DModel-methods . calculateGaussianMixture . calculateHolesCharacteristics . calculateIgraph . calculateNetworkParameters . calculateNetworkSkeleton . calculateNetworks-methods . calculatePhysicalDistanceFromPath . calculateShortestPaths . canBeRemoved . checkIsotropy . checkNormality . createGraph . displayColoredNetworkWithVerticesSize . displayHolesIn3D . displayIn3D . displaygridIgraphPlot . displaygridIgraphPlotFromEdges . dnormalmix . existsEdge . existsSegment . exportToSTL . fusionCloseNodes . generateAFMImageReport . generateCheckReport . generatePolygonEnvelope . generateReport . generateReportFromNanoscopeImageDirectory . get3DImageFullfilename . getAllPointsToRemove . getAngle . getAutoIntersectionForOmnidirectionalVariogram . getAutoIntersectionForRoughnessAgainstLengthscale . getBresenham2DSegment . getCircleSpatialPoints . getCoordinatesFromVertexId . getIntersectionForRoughnessAgainstLengthscale . getIntersectionPointWithBorder . getListOfDiameters . getLogLogOmnidirectionalSlopeGraph . getMaxCircleMatrix . getNetworkGridLayout . getNetworkParameters-methods . getNyquistSpatialFrequency-methods . getPaddedAFMImage . getRoughnessParameters-methods . getSurroundingVertexesList . getTopologyAFMImage . getTriangle . getVertexId . gridIgraphPlot . identifyEdgesFromCircles . identifyIsolatedNodes . identifyMaxCircleRadius . identifyNodesAndEdges . identifyNodesWithCircles . isAdjacentToBetterVertex . isAngleBetweenEdgesAlwaysSuperiorToMinAngle . loglike.normalmix . omniVariogramSlopeAnalysis-class . performAllPSDCalculation . performGaussianMixCalculation . pnormmix . printVariogramModelEvaluations . putAnalysisOnDisk-methods . putImagesFromAnalysisOnDisk . removeLonguestEdge . removeNode . runAFMApp . saveOnDiskIntersectionForRoughnessAgainstLengthscale . shiftFFT2D . shiftedPSDuv . simplifyNetwork . thinImage . totalRMSRoughness . transformAFMImageForNetworkAnalysis-methods . 
Some associated R codes: AFM3DPrinter.R . AFMFractalDimensionAnalyser.R . AFMGaussianMixAnalyser.R . AFMImage.R . AFMImageAnalyser.R . AFMNetworksAnalyser.R . AFMPSDAnalyser.R . AFMReportMaker.R . AFMVariogramAnalyser.R . pkgname.R . runAFMApp.R .  Full AFM package functions and examples
Downloads during the last 30 days
04/0104/0204/0304/0404/0504/0604/0704/0804/0904/1004/1104/1204/1304/1404/1504/1604/1704/1804/1904/2004/2104/2204/2304/2404/2504/2604/2704/2804/29Downloads for AFM051015202530354045TrendBars

Today's Hot Picks in Authors and Packages

fbar  
An Extensible Approach to Flux Balance Analysis
A toolkit for Flux Balance Analysis and related metabolic modeling techniques. Functions are provid ...
Download / Learn more Package Citations See dependency  
dsm  
Density Surface Modelling of Distance Sampling Data
Density surface modelling of line transect data. A Generalized Additive Model-based approach is use ...
Download / Learn more Package Citations See dependency  
dCUR  
Dimension Reduction with Dynamic CUR
Dynamic CUR (dCUR) boosts the CUR decomposition (Mahoney MW., Drineas P. (2009) ...
Download / Learn more Package Citations See dependency  
pander  
An R 'Pandoc' Writer
Contains some functions catching all messages, 'stdout' and other useful information while evaluati ...
Download / Learn more Package Citations See dependency  
representr  
Create Representative Records After Entity Resolution
An implementation of Kaplan, Betancourt, Steorts (2022) that cre ...
Download / Learn more Package Citations See dependency  
geofabrik  
Downloading Open Street Map Data
Download OpenStreetMap data from geofabrik servers httpsdownload.geofabrik.de. This approach usesonl ...
Download / Learn more Package Citations See dependency  

24,142

R Packages

207,311

Dependencies

65,176

Author Associations

24,143

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA