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yaps
View on CRAN: Click
here
Download and install yaps package within the R console
Install from CRAN:
install.packages("yaps")
Install from Github:
library("remotes")
install_github("cran/yaps")
Install by package version:
library("remotes")
install_version("yaps", "1.2.5")
Attach the package and use:
library("yaps")
Maintained by
Henrik Baktoft
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
First Published: 2021-02-10
Latest Update: 2023-03-12
Description:
Estimate tracks of animals tagged with acoustic transmitters. yaps was introduced in 2017 as a transparent open-source tool to estimate positions of fish and other aquatic animals tagged with acoustic transmitters. Based on registrations of acoustic transmitters on hydrophones positioned in a fixed array yaps enables users to synchronize the collected data i.e. correcting for drift in the internal clocks of the hydrophonesreceivers and subsequently to estimate tracks of the tagged animals. The paper introducing yaps is available in open access at Baktoft Gjelland kland Thygesen 2017 doi10.1038s41598-017-14278-z. Also check out our cookbook with a completely worked through example at Baktoft Gjelland kland Rehage Rodemann Corujo Viadero Thygesen 2019 DOI10.11012019.12.16.877688. Additional tutorials will eventually make their way onto the project website at httpsbaktoft.github.ioyaps.
How to cite:
Henrik Baktoft (2021). yaps: Track Estimation using YAPS (Yet Another Positioning Solver). R package version 1.2.5, https://cran.r-project.org/web/packages/yaps. Accessed 05 May. 2025.
Other packages that cited yaps R package
View yaps citation profile
Other R packages that yaps depends,
imports, suggests or enhances
Functions, R codes and Examples using
the yaps R package
Some associated functions: alignBurstSeq . applySync . checkInp . checkInpSync . dat_align . fineTuneSyncModel . getBbox . getInp . getInpSync . getSyncCoverage . getSyncModel . getToaYaps . plotBbox . plotSyncModelCheck . plotSyncModelHydros . plotSyncModelResids . plotYaps . prepDetections . runYaps . simHydros . simTelemetryTrack . simToa . simTrueTrack . ssu1 . tempToSs . testYaps .
Some associated R codes: alignBurstSeq.R . applySync.R . checkInp.R . checkInpSync.R . data.R . fineTuneSyncModel.R . getBbox.R . getInp.R . getInpSync.R . getSyncModel.R . getToaYaps.R . pkgHelperFuncs.R . plotBbox.R . plotYaps.R . prepFiles.R . prepTmb.R . runYaps.R . simTrack.R . syncGetters.R . syncHelperFuncs.R . syncPlotters.R . tempToSs.R . testYaps.R . zzz.R . Full yaps package functions and examples
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