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xQTLbiolinks  

Integrative Analysis of Quantitative Trait Locus Data of "xQTL"
View on CRAN: Click here


Download and install xQTLbiolinks package within the R console
Install from CRAN:
install.packages("xQTLbiolinks")

Install from Github:
library("remotes")
install_github("cran/xQTLbiolinks")

Install by package version:
library("remotes")
install_version("xQTLbiolinks", "1.6.2")



Attach the package and use:
library("xQTLbiolinks")
Maintained by
Ruofan Ding
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-06-28
Latest Update: 2024-01-10
Description:
Enables users-customized data retrieval, processing, analysis, and data visualization of molecular quantitative trait locus and gene expression data from public resources through the application programming interface of 'GTEx' and of 'eQTL cagalogue'.
How to cite:
Ruofan Ding (2022). xQTLbiolinks: Integrative Analysis of Quantitative Trait Locus Data of "xQTL". R package version 1.6.2, https://cran.r-project.org/web/packages/xQTLbiolinks. Accessed 09 May. 2025.
Previous versions and publish date:
1.0.0 (2022-06-28 18:00), 1.1.1 (2022-07-14 11:30), 1.2.2 (2022-08-27 15:50), 1.4.2 (2023-05-04 17:20), 1.5.2 (2023-07-05 06:10), 1.6.2 (2023-09-15 00:00)
Other packages that cited xQTLbiolinks R package
View xQTLbiolinks citation profile
Other R packages that xQTLbiolinks depends, imports, suggests or enhances
Functions, R codes and Examples using the xQTLbiolinks R package
Some associated functions: EBIquery_allTerm . apiAdmin_ping . apiEbi_ping . dbsnpQueryRange . ebi_study_tissues . example_Coloc_colocResultAll . example_Coloc_colocResultsig . example_Coloc_gwasDF . example_Coloc_hyprcolocResultAll . example_Coloc_sentinelSNP . example_Coloc_traitsAll . extractGeneInfo . fetchContent . fetchContentEbi . gencodeGeneInfoAllGranges . gencodeGenetype . is.wholenumber . retrieveLD . sampleNum . tissueSiteDetailGTExv7 . tissueSiteDetailGTExv8 . xQTLanalyze_TSExp . xQTLanalyze_coloc . xQTLanalyze_getSentinelSnp . xQTLanalyze_getTraits . xQTLanalyze_propensity . xQTLdownload_egene . xQTLdownload_eqtl . xQTLdownload_eqtlAllAsso . xQTLdownload_eqtlAllAssoPos . xQTLdownload_eqtlExp . xQTLdownload_eqtlSig . xQTLdownload_exp . xQTLdownload_geneMedExp . xQTLdownload_sgene . xQTLdownload_sqtlExp . xQTLdownload_sqtlSig . xQTLquery_gene . xQTLquery_geneAll . xQTLquery_sampleBySampleId . xQTLquery_sampleByTissue . xQTLquery_tissue . xQTLquery_varId . xQTLquery_varPos . xQTLvisual_eqtl . xQTLvisual_eqtlExp . xQTLvisual_geneExpTissues . xQTLvisual_genesExp . xQTLvisual_locusCombine . xQTLvisual_locusCompare . xQTLvisual_locusZoom . xQTLvisual_qtlPropensity . xQTLvisual_sqtlExp . 
Some associated R codes: analyze.R . download.R . global.R . internal_dealWithGencode.R . query.R . visualize.R . xQTLbiolinks.R . zzz.R .  Full xQTLbiolinks package functions and examples
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