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wTO  

Computing Weighted Topological Overlaps (wTO) & Consensus wTO Network
View on CRAN: Click here


Download and install wTO package within the R console
Install from CRAN:
install.packages("wTO")

Install from Github:
library("remotes")
install_github("cran/wTO")

Install by package version:
library("remotes")
install_version("wTO", "2.1")



Attach the package and use:
library("wTO")
Maintained by
Deisy Morselli Gysi
[Scholar Profile | Author Map]
First Published: 2017-05-29
Latest Update: 2023-03-22
Description:
Computes the Weighted Topological Overlap with positive and negative signs (wTO) networks given a data frame containing the mRNA count/ expression/ abundance per sample, and a vector containing the interested nodes of interaction (a subset of the elements of the full data frame). It also computes the cut-off threshold or p-value based on the individuals bootstrap or the values reshuffle per individual. It also allows the construction of a consensus network, based on multiple wTO networks. The package includes a visualization tool for the networks. More about the methodology can be found at .
How to cite:
Deisy Morselli Gysi (2017). wTO: Computing Weighted Topological Overlaps (wTO) & Consensus wTO Network. R package version 2.1, https://cran.r-project.org/web/packages/wTO. Accessed 29 Apr. 2025.
Previous versions and publish date:
1.1.0 (2017-05-29 10:37), 1.2.0 (2017-06-08 13:36), 1.2.2 (2017-07-16 17:29), 1.3.0 (2017-10-04 15:04), 1.4.0 (2017-11-12 11:35), 1.4.1 (2017-11-22 12:46), 1.4.2 (2018-02-01 13:46), 1.5 (2018-03-02 12:25), 1.6.1 (2018-06-28 10:25), 1.6.2 (2018-10-14 22:50), 1.6.3 (2018-11-17 12:50), 1.6 (2018-05-30 18:05), 2.0.1 (2022-05-24 21:50), 2.0.2 (2023-03-22 20:10), 2.0 (2022-05-11 00:00)
Other packages that cited wTO R package
View wTO citation profile
Other R packages that wTO depends, imports, suggests or enhances
Complete documentation for wTO
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