Other packages > Find by keyword >

wTO  

Computing Weighted Topological Overlaps (wTO) & Consensus wTO Network
View on CRAN: Click here


Download and install wTO package within the R console
Install from CRAN:
install.packages("wTO")

Install from Github:
library("remotes")
install_github("cran/wTO")

Install by package version:
library("remotes")
install_version("wTO", "2.1")



Attach the package and use:
library("wTO")
Maintained by
Deisy Morselli Gysi
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-05-29
Latest Update: 2024-07-04
Description:
Computes the Weighted Topological Overlap with positive and negative signs (wTO) networks given a data frame containing the mRNA count/ expression/ abundance per sample, and a vector containing the interested nodes of interaction (a subset of the elements of the full data frame). It also computes the cut-off threshold or p-value based on the individuals bootstrap or the values reshuffle per individual. It also allows the construction of a consensus network, based on multiple wTO networks. The package includes a visualization tool for the networks. More about the methodology can be found at .
How to cite:
Deisy Morselli Gysi (2017). wTO: Computing Weighted Topological Overlaps (wTO) & Consensus wTO Network. R package version 2.1, https://cran.r-project.org/web/packages/wTO. Accessed 05 Aug. 2026.
Previous versions and publish date:
(2026-07-09 06:59), 1.1.0 (2017-05-29 10:37), 1.2.0 (2017-06-08 13:36), 1.2.2 (2017-07-16 17:29), 1.3.0 (2017-10-04 15:04), 1.4.0 (2017-11-12 11:35), 1.4.1 (2017-11-22 12:46), 1.4.2 (2018-02-01 13:46), 1.5 (2018-03-02 12:25), 1.6.1 (2018-06-28 10:25), 1.6.2 (2018-10-14 22:50), 1.6.3 (2018-11-17 12:50), 1.6 (2018-05-30 18:05), 2.0.1 (2022-05-24 21:50), 2.0.2 (2023-03-22 20:10), 2.0 (2022-05-11 00:00)
Other packages that cited wTO R package
View wTO citation profile
Other R packages that wTO depends, imports, suggests or enhances
Complete documentation for wTO
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
noisyr  
Noise Quantification in High Throughput Sequencing Output
Quantifies and removes technical noise from high-throughput sequencing data. Two approaches are use ...
Download / Learn more Package Citations See dependency  
dhReg  
Dynamic Harmonic Regression
Building and forecasting time series data with multiple seasonality using Dynamic Harmonic Regressio ...
Download / Learn more Package Citations See dependency  
dcov  
A Fast Implementation of Distance Covariance
Efficient methods for computing distance covariance and relevant statistics. See Sz ...
Download / Learn more Package Citations See dependency  
kernelPSI  
Post-Selection Inference for Nonlinear Variable Selection
Different post-selection inference strategies for kernelselection as described in kernelPSI a Post-S ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA