R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
vrnmf
View on CRAN: Click
here
Download and install vrnmf package within the R console
Install from CRAN:
install.packages("vrnmf")
Install from Github:
library("remotes")
install_github("cran/vrnmf") Install by package version:
library("remotes")
install_version("vrnmf", "1.0.2") Attach the package and use:
library("vrnmf")
Maintained by
Evan Biederstedt
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-08-20
Latest Update: 2022-02-25
Description:
Implements a set of routines to perform structured matrix factorization with minimum volume constraints. The NMF procedure decomposes a matrix X into a product C * D. Given conditions such that the matrix C is non-negative and has sufficiently spread columns, then volume minimization of a matrix D delivers a correct and unique, up to a scale and permutation, solution (C, D). This package provides both an implementation of volume-regularized NMF and "anchor-free" NMF, whereby the standard NMF problem is reformulated in the covariance domain. This algorithm was applied in Vladimir B. Seplyarskiy Ruslan A. Soldatov, et al. "Population sequencing data reveal a compendium of mutational processes in the human germ line". Science, 12 Aug 2021. <doi:10.1126/science.aba7408>. This package interacts with data available through the 'simulatedNMF' package, which is available in a 'drat' repository. To access this data package, see the instructions at <https://github.com/kharchenkolab/vrnmf>. The size of the 'simulatedNMF' package is approximately 8 MB.
How to cite:
Evan Biederstedt (2021). vrnmf: Volume-Regularized Structured Matrix Factorization. R package version 1.0.2, https://cran.r-project.org/web/packages/vrnmf. Accessed 15 Jul. 2026.
Previous versions and publish date:
Other packages that cited vrnmf R package
View vrnmf citation profile
Other R packages that vrnmf depends,
imports, suggests or enhances
Complete documentation for vrnmf
Functions, R codes and Examples using
the vrnmf R package
Some associated functions: AnchorFree . factor_intensities . infer_intensities . projection_onto_simplex . sim_factors . vol_preprocess . volnmf_det . volnmf_estimate . volnmf_logdet . volnmf_main . volnmf_procrustes . volnmf_simplex_col . volnmf_simplex_row .
Some associated R codes: anchor.R . infer_intensities.R . simulate_factorization.R . update_simplex.R . update_unitary.R . update_volume.R . volnmf_estimate.R . vpreprocess.R . Full vrnmf package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
footBayes
This is the first package allowing for the estimation,
visualization and prediction of the most wel ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Leonardo Egidi (view profile)
binhf
Binomial Haar-Fisz transforms for Gaussianization as in Nunes and Nason (2009). ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Matt Nunes (view profile)
pulseTD
A tool for analyzing the transcription, processing and degradation rates of genes by 4sU-seq (the Me ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: XinWang (view profile)
PermAlgo
This version of the permutational algorithm generates a
dataset in which event and censoring times ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Marie-Pierre Sylvestre (view profile)
r2resize
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
gscaLCA
Execute Latent Class Analysis (LCA) and Latent Class Regression (LCR) by using Generalized Structu ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Seohee Park (view profile)
27,806
R Packages
239,283
Dependencies
73,837
Author Associations
27,807
Publication Badges
