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voluModel
View on CRAN: Click
here
Download and install voluModel package within the R console
Install from CRAN:
install.packages("voluModel")
Install from Github:
library("remotes")
install_github("cran/voluModel")
Install by package version:
library("remotes")
install_version("voluModel", "0.2.2")
Attach the package and use:
library("voluModel")
Maintained by
Hannah L. Owens
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-03-15
Latest Update: 2024-01-24
Description:
Facilitates modeling species' ecological niches and geographic distributions based on occurrences and environments that have a vertical as well as horizontal component, and projecting models into three-dimensional geographic space. Working in three dimensions is useful in an aquatic context when the organisms one wishes to model can be found across a wide range of depths in the water column. The package also contains functions to automatically generate marine training model training regions using machine learning, and interpolate and smooth patchily sampled environmental rasters using thin plate splines. Davis Rabosky AR, Cox CL, Rabosky DL, Title PO, Holmes IA, Feldman A, McGuire JA (2016) <doi:10.1038/ncomms11484>. Nychka D, Furrer R, Paige J, Sain S (2021) <doi:10.5065/D6W957CT>. Pateiro-Lopez B, Rodriguez-Casal A (2022) <https://CRAN.R-project.org/package=alphahull>.
How to cite:
Hannah L. Owens (2022). voluModel: Modeling Species Distributions in Three Dimensions. R package version 0.2.2, https://cran.r-project.org/web/packages/voluModel. Accessed 21 Nov. 2024.
Previous versions and publish date:
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Complete documentation for voluModel
Functions, R codes and Examples using
the voluModel R package
Some associated functions: MESS3D . areColors . blendColor . bottomRaster . centerPointRasterTemplate . columnParse . diversityStack . downsample . interpolateRaster . mSampling2D . mSampling3D . marineBackground . oneRasterPlot . plotLayers . pointCompMap . pointMap . rasterComp . smoothRaster . testIntersection . transpColor . xyzSample .
Some associated R codes: BackgroundSamplingFunctions.R . inputProcessingUtilties.R . interpolateRaster.R . marineBackground.R . modelDiagnostics.R . visualizations.R . xyzSample.R . Full voluModel package functions and examples
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