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volcano3D
View on CRAN: Click
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Download and install volcano3D package within the R console
Install from CRAN:
install.packages("volcano3D")
Install from Github:
library("remotes")
install_github("cran/volcano3D")
Install by package version:
library("remotes")
install_version("volcano3D", "2.0.9")
Attach the package and use:
library("volcano3D")
Maintained by
Katriona Goldmann
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-06-04
Latest Update: 2023-05-17
Description:
Generates interactive plots for analysing and visualising three-class high dimensional data. It is particularly suited to visualising differences in continuous attributes such as gene/protein/biomarker expression levels between three groups. Differential gene/biomarker expression analysis between two classes is typically shown as a volcano plot. However, with three groups this type of visualisation is particularly difficult to interpret. This package generates 3D volcano plots and 3-way polar plots for easier interpretation of three-class data.
How to cite:
Katriona Goldmann (2020). volcano3D: 3D Volcano Plots and Polar Plots for Three-Class Data. R package version 2.0.9, https://cran.r-project.org/web/packages/volcano3D. Accessed 22 Dec. 2024.
Previous versions and publish date:
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imports, suggests or enhances
Complete documentation for volcano3D
Functions, R codes and Examples using
the volcano3D R package
Some associated functions: add_animation . boxplot_trio . calc_pvals . calc_stats_2x3 . deseq_2x3 . deseq_2x3_polar . deseq_polar . forest_plot . grid-class . polar_coords . polar_coords_2x3 . polar_grid . radial_ggplot . radial_plotly . show_grid . significance_subset . syn_example_meta . syn_example_rld . volc3d-class . volcano3D . voom_polar .
Some associated R codes: add_animation.R . boxplot_trio.R . boxplot_trio_old.R . deseq_2x3.R . deseq_2x3_polar.R . deseq_polar.R . example_data.R . forest_plot.R . polar_coords.R . polar_coords_2x3.R . polar_grid.R . radial_ggplot.R . radial_ggplot_old.R . radial_plotly.R . radial_plotly_old.R . show_grid.R . significance_subset.R . volcano3D.R . volcano3D_old.R . voom_polar.R . zzz.R . Full volcano3D package functions and examples
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