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viewpoly
View on CRAN: Click
here
Download and install viewpoly package within the R console
Install from CRAN:
install.packages("viewpoly")
Install from Github:
library("remotes")
install_github("cran/viewpoly") Install by package version:
library("remotes")
install_version("viewpoly", "0.4.1") Attach the package and use:
library("viewpoly")
Maintained by
Cristiane Taniguti
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-12-16
Latest Update: 2024-03-28
Description:
Provides a graphical user interface to integrate, visualize and explore results from linkage and quantitative trait loci analysis, together with genomic information for autopolyploid species. The app is meant for interactive use and allows users to optionally upload different sources of information, includinggene annotation and alignment files, enabling the exploitation and search for candidate genes in a genome browser. In its current version, 'VIEWpoly' supports inputs from 'MAPpoly', 'polymapR', 'diaQTL', 'QTLpoly', 'polyqtlR', 'GWASpoly', and 'HIDECAN' packages.
How to cite:
Cristiane Taniguti (2021). viewpoly: A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species. R package version 0.4.1, https://cran.r-project.org/web/packages/viewpoly. Accessed 18 Sep. 2026.
Previous versions and publish date:
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imports, suggests or enhances
Complete documentation for viewpoly
Functions, R codes and Examples using
the viewpoly R package
Some associated functions: breeding_values . calc_homologprob . check_viewmap . check_viewpoly . check_viewqtl . coord_radar . data_effects . dist_prob_to_class . draw_map_shiny . filter_non_conforming_classes . get_LOD . gg_color_hue . imf_h . import_data_from_polymapR . import_phased_maplist_from_polymapR . is.prob.data . map_summary . mf_h . mrk_chisq_test . only_plot_profile . ph_list_to_matrix . ph_matrix_to_list . plot.mappoly.homoprob . plot_cm_mb . plot_effects . plot_map_list . plot_one_map . plot_profile . prepare_MAPpoly . prepare_QTLpoly . prepare_diaQTL . prepare_examples . prepare_map . prepare_map_custom_files . prepare_polymapR . prepare_polyqtlR . prepare_qtl_custom_files . run_app . segreg_poly . select_haplo . summary_maps .
Some associated R codes: app_config.R . app_server.R . app_ui.R . functions_map.R . functions_qtl.R . functions_upload.R . mod_genes_view.R . mod_map_view.R . mod_qtl_view.R . mod_upload.R . run_app.R . utils_helpers.R . Full viewpoly package functions and examples
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