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vermeulen  

Biomarker Data Set by Vermeulen et al. (2009)
View on CRAN: Click here


Download and install vermeulen package within the R console
Install from CRAN:
install.packages("vermeulen")

Install from Github:
library("remotes")
install_github("cran/vermeulen")

Install by package version:
library("remotes")
install_version("vermeulen", "0.1.2")



Attach the package and use:
library("vermeulen")
Maintained by
Ramiro Magno
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-11-10
Latest Update: 2022-11-10
Description:
The 'biomarker' data set by Vermeulen et al. (2009) <doi:10.1016/S1470-2045(09)70154-8> is provided. The data source, however, is by Ruijter et al. (2013) <doi:10.1016/j.ymeth.2012.08.011>. The original data set may be downloaded from <https://medischebiologie.nl/wp-content/uploads/2019/02/qpcrdatamethods.zip>. This data set is for a real-time quantitative polymerase chain reaction ('PCR') experiment that comprises the raw fluorescence data of 24,576 amplification curves. This data set comprises 59 genes of interest and 5 reference genes. Each gene was assessed on 366 neuroblastoma complementary DNA ('cDNA') samples and on 18 standard dilution series samples (10-fold 5-point dilution series x 3 replicates + no template controls ('NTC') x 3 replicates).
How to cite:
Ramiro Magno (2022). vermeulen: Biomarker Data Set by Vermeulen et al. (2009). R package version 0.1.2, https://cran.r-project.org/web/packages/vermeulen. Accessed 07 Nov. 2024.
Previous versions and publish date:
0.1.1 (2022-11-10 20:10)
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Complete documentation for vermeulen
Functions, R codes and Examples using the vermeulen R package
Some associated functions: get_biomarker_dataset . vermeulen-package . 
Some associated R codes: amplification_curves.R . get_biomarker_dataset.R . reactions.R . repo.R . samples.R . targets.R . vermeulen-package.R . wells.R . zzz.R .  Full vermeulen package functions and examples
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