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vegan

Star Watch Copy Code

Community Ecology Package

View on CRAN: Click here

Download and install vegan package within the R console
Install from CRAN:

 install.packages("vegan")

Install from Github:

 library("remotes")

                        install_github("cran/vegan")

Install by package version:

 library("remotes")

                        install_version("vegan", "2.6-8")

Attach the package and use:

 library("vegan")

Maintained by
Jari Oksanen
[Scholar Profile | Author Map]

All associated links for this package

First Published: 2001-09-06

Latest Update: 2022-10-11

Description:

Ordination methods, diversity analysis and other functions for community and vegetation ecologists.

How to cite:

Jari Oksanen (2001). vegan: Community Ecology Package. R package version 2.6-8, https://cran.r-project.org/web/packages/vegan. Accessed 21 Nov. 2024.

Previous versions and publish date:

1.0-1 (2001-09-06 11:12), 1.2-0 (2001-11-19 07:43), 1.2-1 (2001-12-18 10:54), 1.4-0 (2002-05-03 16:10), 1.4-1 (2002-10-04 08:52), 1.4-2 (2003-02-07 13:50), 1.4-3 (2003-04-22 18:18), 1.4-4 (2003-05-19 11:56), 1.6-0 (2003-10-20 22:05), 1.6-1 (2003-12-12 13:22), 1.6-2 (2004-01-22 15:04), 1.6-3 (2004-03-22 12:35), 1.6-4 (2004-06-11 10:51), 1.6-5 (2004-10-13 19:14), 1.6-6 (2005-01-09 22:47), 1.6-7 (2005-01-25 10:17), 1.6-8 (2005-04-18 10:20), 1.6-9 (2005-04-22 13:46), 1.6-10 (2005-09-26 17:30), 1.8-1 (2006-06-12 11:50), 1.8-2 (2006-06-14 13:14), 1.8-3 (2006-09-29 13:48), 1.8-4 (2007-01-08 20:55), 1.8-5 (2007-01-11 20:41), 1.8-6 (2007-05-10 09:10), 1.8-7 (2007-08-25 18:53), 1.8-8 (2007-10-03 12:05), 1.11-0 (2008-02-21 20:59), 1.11-2 (2008-03-21 20:28), 1.11-3 (2008-04-10 15:35), 1.11-4 (2008-04-24 08:40), 1.13-0 (2008-05-21 18:26), 1.13-1 (2008-06-11 11:16), 1.13-2 (2008-08-20 14:14), 1.15-0 (2008-09-30 11:26), 1.15-1 (2008-12-19 11:56), 1.15-2 (2009-04-15 15:51), 1.15-3 (2009-06-17 14:05), 1.15-4 (2009-09-07 15:03), 1.17-0 (2010-01-11 19:10), 1.17-1 (2010-02-18 14:05), 1.17-2 (2010-03-08 20:01), 1.17-3 (2010-06-16 17:08), 1.17-4 (2010-08-20 09:16), 1.17-5 (2010-12-18 08:07), 1.17-6 (2011-01-10 11:25), 1.17-7 (2011-02-16 13:08), 1.17-8 (2011-03-02 16:16), 1.17-9 (2011-03-31 17:19), 1.17-10 (2011-04-27 19:19), 1.17-11 (2011-06-15 20:13), 1.17-12 (2011-08-17 22:28), 2.0-0 (2011-09-08 08:02), 2.0-1 (2011-10-20 13:22), 2.0-2 (2011-11-15 18:09), 2.0-3 (2012-03-03 16:54), 2.0-4 (2012-06-19 11:32), 2.0-5 (2012-10-08 16:39), 2.0-6 (2013-02-11 14:26), 2.0-7 (2013-03-19 16:05), 2.0-8 (2013-07-10 16:36), 2.0-9 (2013-09-25 09:56), 2.0-10 (2013-12-12 11:32), 2.2-0 (2014-11-17 11:35), 2.2-1 (2015-01-12 14:18), 2.3-0 (2015-05-26 15:49), 2.3-1 (2015-09-25 16:36), 2.3-2 (2015-11-19 17:20), 2.3-3 (2016-01-12 11:59), 2.3-4 (2016-02-26 14:12), 2.3-5 (2016-04-09 00:53), 2.4-0 (2016-06-15 15:38), 2.4-1 (2016-09-07 14:41), 2.4-2 (2017-01-17 19:41), 2.4-3 (2017-04-07 14:27), 2.4-4 (2017-08-24 16:40), 2.4-5 (2017-12-01 18:54), 2.4-6 (2018-01-24 13:54), 2.5-1 (2018-04-14 17:09), 2.5-2 (2018-05-17 11:05), 2.5-3 (2018-10-25 10:00), 2.5-4 (2019-02-04 12:50), 2.5-5 (2019-05-12 16:50), 2.5-6 (2019-09-01 16:30), 2.5-7 (2020-11-28 16:10), 2.6-2 (2022-04-17 19:00), 2.6-4 (2022-10-11 14:40), 2.6-6.1 (2024-05-21 20:00), 2.6-6 (2024-05-14 09:40)

Other packages that cited vegan R package

View vegan citation profile

Other R packages that vegan depends, imports, suggests or enhances

View vegan dependency map

Complete documentation for vegan

View documentation PDF

Functions, R codes and Examples using the vegan R package

Some associated functions: BCI . CCorA . MDSrotate . MOStest . RsquareAdj . SSarrhenius . add1.cca . adipart . adonis . anosim . anova.cca . avgdist . beals . betadisper . betadiver . bgdispersal . bioenv . biplot.rda . capscale . cascadeKM . cca . ccaject . clamtest . commsim . contribdiv . decorana . decostand . designdist . deviance.cca . dispindmorisita . dispweight . distconnected . diversity . dune . dune.taxon . eigenvals . envfit . eventstar . fisherfit . goodness.cca . goodness.metaMDS . indpower . influence.cca . isomap . kendall.global . linestack . make.cepnames . mantel.correlog . mantel . metaMDS . mite . monoMDS . mrpp . mso . multipart . nestedtemp . nobs.cca . nullmodel . oecosimu . ordiArrowTextXY . ordiarrows . ordihull . ordilabel . ordiplot . ordipointlabel . ordiresids . ordistep . ordisurf . orditkplot . orditorp . ordixyplot . pcnm . permatfull . permustats . permutations . permutest.betadisper . plot.cca . prc . predict.cca . procrustes . pyrifos . radfit . rankindex . rarefy . raupcrick . read.cep . renyi . reorder.hclust . scores . screeplot.cca . simper . simulate.rda . sipoo . spantree . specaccum . specpool . sppscores . stepacross . stressplot.wcmdscale . taxondive . tolerance . treedive . tsallis . varechem . varpart . vegan-defunct . vegan-deprecated . vegan-internal . vegan-package . vegdist . vegemite . wascores . wcmdscale .
Some associated R codes: AIC.radfit.R . CCorA.R . GowerDblcen.R . MDSrotate.R . MOStest.R . RsquareAdj.R . SSarrhenius.R . SSgitay.R . SSgleason.R . SSlomolino.R . TukeyHSD.betadisper.R . add1.cca.R . adipart.R . adipart.default.R . adipart.formula.R . adonis-deprecated.R . adonis.R . alias.cca.R . anosim.R . anova.betadisper.R . anova.cca.R . anova.ccabyterm.R . anova.ccalist.R . anova.ccanull.R . anova.prc.R . as.fisher.R . as.hclust.spantree.R . as.mcmc.oecosimu.R . as.preston.R . as.rad.R . as.ts.oecosimu.R . as.ts.permat.R . avgdist.R . beals.R . betadisper.R . betadiver.R . bgdispersal.R . bioenv.R . bioenv.default.R . bioenv.formula.R . biplot.CCorA.R . biplot.rda.R . boxplot.betadisper.R . boxplot.specaccum.R . bstick.R . bstick.cca.R . bstick.decorana.R . bstick.default.R . bstick.prcomp.R . bstick.princomp.R . cIndexKM.R . calibrate.R . calibrate.cca.R . calibrate.ordisurf.R . capscale.R . cascadeKM.R . cca.R . cca.default.R . cca.formula.R . centroids.cca.R . checkSelect.R . clamtest.R . coef.cca.R . coef.radfit.R . coef.rda.R . commsim.R . confint.MOStest.R . contribdiv.R . cophenetic.spantree.R . coverscale.R . dbrda.R . decorana.R . decostand.R . designdist.R . deviance.cca.R . deviance.rda.R . dispindmorisita.R . dispweight.R . distconnected.R . diversity.R . downweight.R . drop1.cca.R . eigengrad.R . eigenvals.R . envfit.R . envfit.default.R . envfit.formula.R . estaccumR.R . estimateR.R . estimateR.data.frame.R . estimateR.default.R . estimateR.matrix.R . eventstar.R . extractAIC.cca.R . factorfit.R . fieller.MOStest.R . fisher.alpha.R . fisherfit.R . fitspecaccum.R . fitted.capscale.R . fitted.cca.R . fitted.dbrda.R . fitted.procrustes.R . fitted.radfit.R . fitted.rda.R . gdispweight.R . getPermuteMatrix.R . goodness.R . goodness.cca.R . goodness.metaMDS.R . head.summary.cca.R . hierParseFormula.R . hiersimu.R . hiersimu.default.R . hiersimu.formula.R . howHead.R . humpfit.R . identify.ordiplot.R . indpower.R . inertcomp.R . influence.cca.R . initMDS.R . intersetcor.R . isomap.R . isomapdist.R . kendall.global.R . kendall.post.R . labels.envfit.R . lines.permat.R . lines.prestonfit.R . lines.procrustes.R . lines.radline.R . lines.spantree.R . linestack.R . make.cepnames.R . make.commsim.R . mantel.R . mantel.correlog.R . mantel.partial.R . meandist.R . metaMDS.R . metaMDSdist.R . metaMDSiter.R . metaMDSredist.R . model.frame.cca.R . model.matrix.cca.R . monoMDS.R . mrpp.R . mso.R . msoplot.R . multipart.R . multipart.default.R . multipart.formula.R . nestedbetasor.R . nestedchecker.R . nesteddisc.R . nestedn0.R . nestednodf.R . nestedtemp.R . no.shared.R . nobs.R . nullmodel.R . oecosimu.R . ordConstrained.R . orderingKM.R . ordiArgAbsorber.R . ordiArrowMul.R . ordiArrowTextXY.R . ordiNAexclude.R . ordiParseFormula.R . ordiR2step.R . ordiTerminfo.R . ordiYbar.R . ordiareatest.R . ordiarrows.R . ordibar.R . ordicloud.R . ordicluster.R . ordiellipse.R . ordigrid.R . ordihull.R . ordilabel.R . ordilattice.getEnvfit.R . ordimedian.R . ordiplot.R . ordipointlabel.R . ordiresids.R . ordisegments.R . ordispider.R . ordisplom.R . ordistep.R . ordisurf.R . orditkplot.R . orditorp.R . ordixyplot.R . panel.ordi.R . panel.ordi3d.R . pasteCall.R . pcnm.R . permatfull.R . permatswap.R . permustats.R . permutest.betadisper.R . permutest.cca.R . persp.renyiaccum.R . persp.tsallisaccum.R . plot.MOStest.R . plot.anosim.R . plot.betadisper.R . plot.betadiver.R . plot.cascadeKM.R . plot.cca.R . plot.clamtest.R . plot.contribdiv.R . plot.decorana.R . plot.envfit.R . plot.fisherfit.R . plot.isomap.R . plot.mantel.correlog.R . plot.meandist.R . plot.metaMDS.R . plot.nestedtemp.R . plot.ordipointlabel.R . plot.ordisurf.R . plot.orditkplot.R . plot.permat.R . plot.poolaccum.R . plot.prc.R . plot.preston.R . plot.prestonfit.R . plot.procrustes.R . plot.rad.R . plot.radfit.R . plot.radfit.frame.R . plot.radline.R . plot.renyi.R . plot.renyiaccum.R . plot.spantree.R . plot.specaccum.R . plot.taxondive.R . plot.varpart.R . plot.varpart234.R . points.cca.R . points.decorana.R . points.metaMDS.R . points.ordiplot.R . points.orditkplot.R . points.procrustes.R . points.radline.R . poolaccum.R . postMDS.R . prc.R . predict.cca.R . predict.decorana.R . predict.fitspecaccum.R . predict.humpfit.R . predict.radline.R . predict.rda.R . predict.specaccum.R . pregraphKM.R . prepanel.ordi3d.R . prestondistr.R . prestonfit.R . print.CCorA.R . print.MOStest.R . print.anosim.R . print.betadisper.R . print.bioenv.R . print.cca.R . print.commsim.R . print.decorana.R . print.envfit.R . print.factorfit.R . print.fisherfit.R . print.isomap.R . print.mantel.R . print.mantel.correlog.R . print.metaMDS.R . print.monoMDS.R . print.mrpp.R . print.mso.R . print.nestedchecker.R . print.nesteddisc.R . print.nestedn0.R . print.nestednodf.R . print.nestedtemp.R . print.nullmodel.R . print.oecosimu.R . print.permat.R . print.permutest.betadisper.R . print.permutest.cca.R . print.poolaccum.R . print.prestonfit.R . print.procrustes.R . print.protest.R . print.radfit.R . print.radfit.frame.R . print.radline.R . print.simmat.R . print.specaccum.R . print.summary.bioenv.R . print.summary.cca.R . print.summary.clamtest.R . print.summary.decorana.R . print.summary.isomap.R . print.summary.meandist.R . print.summary.permat.R . print.summary.prc.R . print.summary.procrustes.R . print.summary.taxondive.R . print.taxondive.R . print.varpart.R . print.varpart234.R . print.vectorfit.R . print.wcmdscale.R . procrustes.R . profile.MOStest.R . profile.humpfit.R . protest.R . rad.lognormal.R . rad.null.R . rad.preempt.R . rad.zipf.R . rad.zipfbrot.R . radfit.R . radfit.data.frame.R . radfit.default.R . radlattice.R . rankindex.R . rarecurve.R . rarefy.R . rareslope.R . raupcrick.R . rda.R . rda.default.R . rda.formula.R . read.cep.R . renyi.R . renyiaccum.R . residuals.cca.R . residuals.procrustes.R . rrarefy.R . scalingUtils.R . scores.R . scores.betadisper.R . scores.betadiver.R . scores.cca.R . scores.decorana.R . scores.default.R . scores.envfit.R . scores.lda.R . scores.metaMDS.R . scores.ordihull.R . scores.ordiplot.R . scores.orditkplot.R . scores.pcnm.R . scores.rda.R . screeplot.cca.R . screeplot.decorana.R . screeplot.prcomp.R . screeplot.princomp.R . showvarparts.R . simper.R . simpleRDA2.R . simpson.unb.R . simulate.nullmodel.R . simulate.rda.R . smbind.R . spandepth.R . spantree.R . specaccum.R . specnumber.R . specpool.R . specpool2vect.R . specslope.R . spenvcor.R . sppscores.R . stepacross.R . str.nullmodel.R . stressplot.R . stressplot.wcmdscale.R . summary.anosim.R . summary.bioenv.R . summary.cca.R . summary.clamtest.R . summary.decorana.R . summary.dispweight.R . summary.isomap.R . summary.meandist.R . summary.ordiellipse.R . summary.ordihull.R . summary.permat.R . summary.poolaccum.R . summary.prc.R . summary.procrustes.R . summary.radfit.frame.R . summary.specaccum.R . summary.taxondive.R . summary.varpart.R . swan.R . tabasco.R . taxa2dist.R . taxondive.R . text.cca.R . text.decorana.R . text.metaMDS.R . text.ordiplot.R . text.orditkplot.R . toCoda.R . tolerance.R . tolerance.cca.R . tolerance.decorana.R . treedist.R . treedive.R . treeheight.R . tsallis.R . tsallisaccum.R . update.nullmodel.R . varpart.R . varpart2.R . varpart3.R . varpart4.R . vectorfit.R . vegan-defunct.R . vegan-deprecated.R . veganCovEllipse.R . veganMahatrans.R . vegandocs.R . vegdist.R . vegemite.R . veiledspec.R . vif.cca.R . wascores.R . wcmdscale.R . weights.cca.R . weights.decorana.R . weights.rda.R . wisconsin.R . zzz.R . Full vegan package functions and examples

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