Other packages > Find by keyword >

vcfppR  

Rapid Manipulation of the Variant Call Format (VCF)
View on CRAN: Click here


Download and install vcfppR package within the R console
Install from CRAN:
install.packages("vcfppR")

Install from Github:
library("remotes")
install_github("cran/vcfppR")

Install by package version:
library("remotes")
install_version("vcfppR", "0.7.1")



Attach the package and use:
library("vcfppR")
Maintained by
Zilong Li
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-12-14
Latest Update: 2024-04-08
Description:
The 'vcfpp.h' (<https://github.com/Zilong-Li/vcfpp>) provides an easy-to-use 'C++' 'API' of 'htslib', offering full functionality for manipulating Variant Call Format (VCF) files. The 'vcfppR' package serves as the R bindings of the 'vcfpp.h' library, enabling rapid processing of both compressed and uncompressed VCF files. Explore a range of powerful features for efficient VCF data manipulation.
How to cite:
Zilong Li (2023). vcfppR: Rapid Manipulation of the Variant Call Format (VCF). R package version 0.7.1, https://cran.r-project.org/web/packages/vcfppR. Accessed 06 Jan. 2025.
Previous versions and publish date:
0.3.5 (2023-12-14 17:30), 0.3.8 (2024-01-14 18:10), 0.4.0 (2024-02-26 15:00), 0.4.3 (2024-03-27 18:30), 0.4.5 (2024-04-08 09:30), 0.4.6 (2024-05-24 11:20), 0.5.0 (2024-09-22 11:20), 0.6.0 (2024-09-30 00:40), 0.7.0 (2024-12-21 12:20)
Other packages that cited vcfppR R package
View vcfppR citation profile
Other R packages that vcfppR depends, imports, suggests or enhances
Complete documentation for vcfppR
Functions, R codes and Examples using the vcfppR R package
Some associated functions: heterozygosity . vcfpopgen . vcfppR-package . vcfreader . vcfsummary . vcftable . vcfwriter . 
Some associated R codes: RcppExports.R . vcf-popgen.R . vcf-summary.R . vcf-tables.R . vcfppR-package.R . zzz.R .  Full vcfppR package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

lmds  
Landmark Multi-Dimensional Scaling
A fast dimensionality reduction method scaleable to large numbers of samples. Landmark Multi-Dime ...
Download / Learn more Package Citations See dependency  
TBFmultinomial  
TBF Methodology Extension for Multinomial Outcomes
Extends the test-based Bayes factor (TBF) methodology to multinomial regression models and discrete ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
ROI.plugin.deoptim  
'DEoptim' and 'DEoptimR' Plugin for the 'R' Optimization Interface
Enhances the R Optimization Infrastructure ('ROI') package with the 'DEoptim' and 'DEoptimR' packag ...
Download / Learn more Package Citations See dependency  
NetSwan  
Network Strengths and Weaknesses Analysis
A set of functions for studying network robustness, resilience and vulnerability. ...
Download / Learn more Package Citations See dependency  
RsqMed  
Total Mediation Effect Size Measure for High-Dimensional Mediators
An implementation of calculating the R-squared measure as a total mediation effect size measure and ...
Download / Learn more Package Citations See dependency  

23,440

R Packages

202,297

Dependencies

63,567

Author Associations

23,434

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA