R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
vcfR
View on CRAN: Click
here
Download and install vcfR package within the R console
Install from CRAN:
install.packages("vcfR")
Install from Github:
library("remotes")
install_github("cran/vcfR") Install by package version:
library("remotes")
install_version("vcfR", "1.15.0") Attach the package and use:
library("vcfR")
Maintained by
Brian J. Knaus
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-02-22
Latest Update: 2023-12-08
Description:
Facilitates easy manipulation of variant call format (VCF) data. Functions are provided to rapidly read from and write to VCF files. Once VCF data is read into R a parser function extracts matrices of data. This information can then be used for quality control or other purposes. Additional functions provide visualization of genomic data. Once processing is complete data may be written to a VCF file (*.vcf.gz). It also may be converted into other popular R objects (e.g., genlight, DNAbin). VcfR provides a link between VCF data and familiar R software.
How to cite:
Brian J. Knaus (2016). vcfR: Manipulate and Visualize VCF Data. R package version 1.15.0, https://cran.r-project.org/web/packages/vcfR. Accessed 06 Jun. 2026.
Previous versions and publish date:
1.0.0 (2016-02-22 22:51), 1.1.0 (2016-05-26 17:54), 1.2.0 (2016-12-05 18:28), 1.3.0 (2016-12-08 15:30), 1.4.0 (2017-01-07 17:45), 1.5.0 (2017-05-18 06:17), 1.6.0 (2017-12-08 01:09), 1.7.0 (2018-02-08 00:34), 1.8.0 (2018-04-17 19:11), 1.9.0 (2020-01-10 11:50), 1.10.0 (2020-02-06 10:50), 1.11.0 (2020-06-05 14:50), 1.12.0 (2020-09-01 10:40), 1.13.0 (2022-07-16 16:30), 1.14.0 (2023-02-10 16:00), 1.15.0 (2023-12-08 01:30)
Other packages that cited vcfR R package
View vcfR citation profile
Other R packages that vcfR depends,
imports, suggests or enhances
Complete documentation for vcfR
Functions, R codes and Examples using
the vcfR R package
Some associated functions: AD_frequency . INFO2df . addID . check_keys . chromR-class . chromR-method . chromR_example . chromR_functions . chrom_to_vcfR . chromo_plot . create_chromR . drplot . extract_gt . fasta_output . freq_peak . freq_peak_plot . genetic_diff . genotype_matrix . getFIX . heatmap_bp . io_vcfR . is_het . maf . masplit . ordisample . pairwise_genetic_diff . peak_to_ploid . pipe . pop_gen_sum . proc_chromR . queryMETA . query_gt . ranking . rePOS . summary_tables . vcfR-class . vcfR-method . vcfR-package . vcfR2DNAbin . vcfR2hapmap . vcfR2migrate . vcfR_conversion . vcfR_example . vcfR_test . vcfR_to_tidy_conversion . vep . windowing .
Some associated R codes: AllClass.R . INFO2df.R . RcppExports.R . addID.R . check_keys.R . chromR-method.R . chromR_example.R . chromR_functions.R . chromR_to_vcfR.R . chromo_plot.R . create_chromR.R . drplot.R . extract_gt.R . fasta_output.R . freq_peak_plot.R . genetic_diff.R . genotype_matrix_functions.R . get_methods.R . gt_to_popsum.R . heatmap_bp.R . io_vcfR.R . is_het.R . maf.R . onUnload.R . ordisample.R . pairwise_genetic_diff.R . peak_to_ploid.R . pipe.R . proc_chromR.R . queryMETA.R . query_gt.R . ranking.R . rePOS.R . sandbox.R . summary_tables.R . vcfR-method.R . vcfR-package.R . vcfR.R . vcfR2DNAbin.R . vcfR2hapmap.R . vcfR2migrate.R . vcfR_conversion.R . vcfR_example.R . vcfR_test.R . vcfR_to_tidy_functions.R . vep.R . windowing.R . zzz.R . Full vcfR package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
IAPWS95
An implementation of the International Association for the
Properties of Water (IAPWS) Formulation ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Shawn Way (view profile)
odbc
A DBI-compatible interface to ODBC databases. ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Hadley Wickham (view profile)
rwavelet
Perform wavelet analysis (orthogonal,translation invariant, tensorial, 1-2-3d transforms, thresholdi ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Navarro Fabien (view profile)
r2resize
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
BALLI
Analysis of gene expression RNA-seq data using Bartlett-Adjusted Likelihood-based LInear model (BALL ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Kyungtaek Park (view profile)
worrrd
Generate wordsearch and crossword puzzles using custom lists of words (and clues).Make them easy or ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Anthony Pileggi (view profile)
27,268
R Packages
233,548
Dependencies
72,820
Author Associations
27,205
Publication Badges
