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vaxineR  

Vaccine Coverage and Outbreak Risk Analysis
View on CRAN: Click here


Download and install vaxineR package within the R console
Install from CRAN:
install.packages("vaxineR")

Install from Github:
library("remotes")
install_github("cran/vaxineR")

Install by package version:
library("remotes")
install_version("vaxineR", "0.1.0")



Attach the package and use:
library("vaxineR")
Maintained by
Peiyu Liu
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-09-15
Latest Update: 2025-09-15
Description:
Provides tools to analyze vaccine coverage data and simulate potential disease outbreak scenarios. It allows users to calculate key epidemiological metrics such as the effective reproduction number (Re), outbreak probabilities, and expected infection counts based on county-level vaccination rates, disease characteristics, and vaccine effectiveness. The package includes historical kindergarten vaccination data for Florida counties and offers functions for generating summary tables, visualizations, and exporting the underlying plot data.
How to cite:
Peiyu Liu (2025). vaxineR: Vaccine Coverage and Outbreak Risk Analysis. R package version 0.1.0, https://cran.r-project.org/web/packages/vaxineR. Accessed 21 Aug. 2026.
Previous versions and publish date:
No previous versions
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Complete documentation for vaxineR
Functions, R codes and Examples using the vaxineR R package
Full vaxineR package functions and examples
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