Other packages > Find by keyword >

variantspark  

A 'Sparklyr' Extension for 'VariantSpark'
View on CRAN: Click here


Download and install variantspark package within the R console
Install from CRAN:
install.packages("variantspark")

Install from Github:
library("remotes")
install_github("cran/variantspark")

Install by package version:
library("remotes")
install_version("variantspark", "0.1.1")



Attach the package and use:
library("variantspark")
Maintained by
Samuel Macêdo
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-06-13
Latest Update: 2019-06-13
Description:
This is a 'sparklyr' extension integrating 'VariantSpark' and R. 'VariantSpark' is a framework based on 'scala' and 'spark' to analyze genome datasets, see <https://bioinformatics.csiro.au/>. It was tested on datasets with 3000 samples each one containing 80 million features in either unsupervised clustering approaches and supervised applications, like classification and regression. The genome datasets are usually writing in VCF, a specific text file format used in bioinformatics for storing gene sequence variations. So, 'VariantSpark' is a great tool for genome research, because it is able to read VCF files, run analyses and return the output in a 'spark' data frame.
How to cite:
Samuel Macêdo (2019). variantspark: A 'Sparklyr' Extension for 'VariantSpark'. R package version 0.1.1, https://cran.r-project.org/web/packages/variantspark. Accessed 15 Jul. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited variantspark R package
View variantspark citation profile
Other R packages that variantspark depends, imports, suggests or enhances
Complete documentation for variantspark
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

pulseTD  
Identification of Transcriptional Dynamics using Pulse Models via 4su-Seq Data and RNA-Seq Data
A tool for analyzing the transcription, processing and degradation rates of genes by 4sU-seq (the Me ...
Download / Learn more Package Citations See dependency  
footBayes  
Fitting Bayesian and MLE Football Models
This is the first package allowing for the estimation, visualization and prediction of the most wel ...
Download / Learn more Package Citations See dependency  
gamlss.add  
Extra Additive Terms for Generalized Additive Models for Location Scale and Shape
Interface for extra smooth functions including tensor products, neural networks and decision trees. ...
Download / Learn more Package Citations See dependency  
binhf  
Haar-Fisz Functions for Binomial Data
Binomial Haar-Fisz transforms for Gaussianization as in Nunes and Nason (2009). ...
Download / Learn more Package Citations See dependency  
gscaLCA  
Generalized Structure Component Analysis- Latent Class Analysis & Latent Class Regression
Execute Latent Class Analysis (LCA) and Latent Class Regression (LCR) by using Generalized Structu ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  

27,806

R Packages

239,283

Dependencies

73,837

Author Associations

27,807

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA