R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
vanquish
View on CRAN: Click
here
Download and install vanquish package within the R console
Install from CRAN:
install.packages("vanquish")
Install from Github:
library("remotes")
install_github("cran/vanquish")
Install by package version:
library("remotes")
install_version("vanquish", "1.0.0")
Attach the package and use:
library("vanquish")
Maintained by
Tao Jiang
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-09-05
Latest Update: 2018-09-05
Description:
Imports Variant Calling Format file into R. It can detect whether a sample contains contaminant from the same species. In the first stage of the approach, a change-point detection method is used to identify copy number variations for filtering. Next, features are extracted from the data for a support vector machine model. For log-likelihood calculation, the deviation parameter is estimated by maximum likelihood method. Using a radial basis function kernel support vector machine, the contamination of a sample can be detected.
How to cite:
Tao Jiang (2018). vanquish: Variant Quality Investigation Helper. R package version 1.0.0, https://cran.r-project.org/web/packages/vanquish. Accessed 21 Nov. 2024.
Previous versions and publish date:
No previous versions
Other packages that cited vanquish R package
View vanquish citation profile
Other R packages that vanquish depends,
imports, suggests or enhances
Complete documentation for vanquish
Functions, R codes and Examples using
the vanquish R package
Some associated functions: config_df . defcon . generate_feature . getAlt2 . getAnnoRate . getAvgLL . getLowDepth . getRatio . getSNVRate . getSkewness . getVar . locateFile . negll . readGATK . readStrelka . readVarDict . readVarPROWL . read_vcf . rho_est . rmCNVinVCF . rmChangePoint . summary_vcf . svm_class_model . svm_regression_model . train_ct . update_vcf . vcf_example .
Some associated R codes: data.R . defcon.R . generate_feature.R . read_vcf.R . rho_est.R . summary_vcf.R . train_ct.R . update_vcf.R . Full vanquish package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by
helping add
Reviews / comments / questions /suggestions ↴↴↴
Today's Hot Picks in Authors and Packages
crossrun
Joint distribution of number of crossings and the
longest run in a series of independent Bernoulli ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Tore Wentzel-Larsen (view profile)
RcppHNSW
'Hnswlib' is a C++ library for Approximate Nearest Neighbors.
This package provides a minimal R int ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: James Melville (view profile)
r2resize
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
deductive
Attempt to repair inconsistencies and missing values in
data records by using information from vali ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Mark van der Loo (view profile)
SCBiclust
Identifies a bicluster, a submatrix of the data such that the features and observations within the s ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Erika S. Helgeson (view profile)
kgschart
Restore underlining numeric data from rating history graph of
KGS (an online platform of the game o ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Kota Mori (view profile)