R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
vanquish
View on CRAN: Click
here
Download and install vanquish package within the R console
Install from CRAN:
install.packages("vanquish")
Install from Github:
library("remotes")
install_github("cran/vanquish") Install by package version:
library("remotes")
install_version("vanquish", "1.0.0") Attach the package and use:
library("vanquish")
Maintained by
Tao Jiang
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-09-05
Latest Update: 2018-09-05
Description:
Imports Variant Calling Format file into R. It can detect whether a sample contains contaminant from the same species. In the first stage of the approach, a change-point detection method is used to identify copy number variations for filtering. Next, features are extracted from the data for a support vector machine model. For log-likelihood calculation, the deviation parameter is estimated by maximum likelihood method. Using a radial basis function kernel support vector machine, the contamination of a sample can be detected.
How to cite:
Tao Jiang (2018). vanquish: Variant Quality Investigation Helper. R package version 1.0.0, https://cran.r-project.org/web/packages/vanquish. Accessed 20 Oct. 2026.
Previous versions and publish date:
(2026-07-09 06:58), 1.0.0 (2018-09-05 16:50)
Other packages that cited vanquish R package
View vanquish citation profile
Other R packages that vanquish depends,
imports, suggests or enhances
Complete documentation for vanquish
Functions, R codes and Examples using
the vanquish R package
Some associated functions: config_df . defcon . generate_feature . getAlt2 . getAnnoRate . getAvgLL . getLowDepth . getRatio . getSNVRate . getSkewness . getVar . locateFile . negll . readGATK . readStrelka . readVarDict . readVarPROWL . read_vcf . rho_est . rmCNVinVCF . rmChangePoint . summary_vcf . svm_class_model . svm_regression_model . train_ct . update_vcf . vcf_example .
Some associated R codes: data.R . defcon.R . generate_feature.R . read_vcf.R . rho_est.R . summary_vcf.R . train_ct.R . update_vcf.R . Full vanquish package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
ISR
Algorithm to handle with PCA-based missing data, where ISR is for PCA-based missing data with high c ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Guangbao Guo (view profile)
EvalEst
Provides functions for evaluating (time series) model
estimation methods. These facilitate Monte Ca ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Paul Gilbert (view profile)
conStruct
A method for modeling genetic data as a combination of discrete
layers, within each of which relate ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Gideon Bradburd (view profile)
MOTE
Measure of the Effect ('MOTE') is an effect size calculator, including a
wide variety of effect siz ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Erin M. Buchanan (view profile)
nextGenShinyApps
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
bgeva
Routine for fitting regression models for binary rare events with linear and nonlinear covariate eff ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Giampiero Marra (view profile)
29,080
R Packages
247,686
Dependencies
76,898
Author Associations
29,081
Publication Badges
