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valr
View on CRAN: Click
here
Download and install valr package within the R console
Install from CRAN:
install.packages("valr")
Install from Github:
library("remotes")
install_github("cran/valr")
Install by package version:
library("remotes")
install_version("valr", "0.8.3")
Attach the package and use:
library("valr")
Maintained by
Kent Riemondy
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.valr . https://github.com/rnabioco/valr/issues . https://github.com/rnabioco/valr/ . https://rnabioco.github.io/valr/ . valr citation info . valr results . valr.pdf . valr-overview . valr_0.8.3.tar.gz . valr_0.8.3.zip . valr_0.8.3.zip . valr_0.8.3.zip . valr_0.8.3.tgz . valr_0.8.3.tgz . valr_0.8.3.tgz . valr_0.8.3.tgz . valr_0.8.3.tgz . valr_0.8.3.tgz . valr archive . https://CRAN.R-project.org/package=valr .
First Published: 2016-11-21
Latest Update: 2023-05-16
Description:
Read and manipulate genome intervals and signals. Provides functionality similar to command-line tool suites within R, enabling interactive analysis and visualization of genome-scale data.Riemondy et al. (2017) <doi:10.12688/f1000research.11997.1>.
How to cite:
Kent Riemondy (2016). valr: Genome Interval Arithmetic. R package version 0.8.3, https://cran.r-project.org/web/packages/valr. Accessed 10 Apr. 2025.
Previous versions and publish date:
0.1.0 (2016-11-21 21:22), 0.1.1 (2016-12-01 11:28), 0.1.2 (2017-03-16 13:35), 0.2.0 (2017-05-05 19:40), 0.3.0 (2017-06-15 15:45), 0.3.1 (2017-07-22 05:36), 0.4.0 (2018-01-25 21:24), 0.4.1 (2018-06-08 14:10), 0.4.2 (2018-11-18 01:50), 0.5.0 (2019-01-03 17:20), 0.6.0 (2020-05-04 19:30), 0.6.1 (2020-05-08 18:20), 0.6.2 (2020-10-07 19:20), 0.6.3 (2021-05-15 07:30), 0.6.4 (2021-12-09 00:00), 0.6.5 (2022-08-19 16:30), 0.6.6 (2022-10-11 20:10), 0.6.7 (2023-02-18 22:30), 0.6.8 (2023-05-16 16:10), 0.7.0 (2023-09-18 21:40), 0.8.0 (2024-04-04 20:40), 0.8.1 (2024-04-22 20:30), 0.8.2 (2024-08-31 00:10)
Other packages that cited valr R package
View valr citation profile
Other R packages that valr depends,
imports, suggests or enhances
Complete documentation for valr
Functions, R codes and Examples using
the valr R package
Some associated functions: bed12_to_exons . bed_absdist . bed_closest . bed_cluster . bed_complement . bed_coverage . bed_fisher . bed_flank . bed_glyph . bed_intersect . bed_jaccard . bed_makewindows . bed_map . bed_merge . bed_partition . bed_projection . bed_random . bed_reldist . bed_shift . bed_shuffle . bed_slop . bed_sort . bed_subtract . bed_window . bound_intervals . create_introns . create_tss . create_utrs3 . create_utrs5 . db . flip_strands . gr_to_bed . id . id_var . interval_spacing . ivl_df . read_bed . read_bigwig . read_genome . read_gtf . read_vcf . valr . valr_example .
Some associated R codes: RcppExports.R . bed_coverage.R . Full valr package functions and examples
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