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ubms
View on CRAN: Click
here
Download and install ubms package within the R console
Install from CRAN:
install.packages("ubms")
Install from Github:
library("remotes")
install_github("cran/ubms")
Install by package version:
library("remotes")
install_version("ubms", "1.2.7")
Attach the package and use:
library("ubms")
Maintained by
Ken Kellner
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.ubms . https://github.com/biodiverse/ubms/issues . https://biodiverse.github.io/ubms/ . ubms citation info . ubms results . ubms.pdf . Comparing models fit in ubms and JAGS . Random effects in ubms . Spatial Models in ubms . Overview of ubms . ubms_1.2.7.tar.gz . ubms_1.2.7.zip . ubms_1.2.7.zip . ubms_1.2.7.zip . ubms_1.2.7.tgz . ubms_1.2.7.tgz . ubms_1.2.7.tgz . ubms_1.2.7.tgz . ubms_1.2.7.tgz . ubms_1.2.7.tgz . ubms archive . https://CRAN.R-project.org/package=ubms .
First Published: 2021-01-19
Latest Update: 2023-09-11
Description:
Fit Bayesian hierarchical models of animal abundance and occurrence via the 'rstan' package, the R interface to the 'Stan' C++ library. Supported models include single-season occupancy, dynamic occupancy, and N-mixture abundance models. Covariates on model parameters are specified using a formula-based interface similar to package 'unmarked', while also allowing for estimation of random slope and intercept terms. References: Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>; Fiske and Chandler (2011) <doi:10.18637/jss.v043.i10>.
How to cite:
Ken Kellner (2021). ubms: Bayesian Models for Data from Unmarked Animals using 'Stan'. R package version 1.2.7, https://cran.r-project.org/web/packages/ubms. Accessed 20 Feb. 2025.
Previous versions and publish date:
Other packages that cited ubms R package
View ubms citation profile
Other R packages that ubms depends,
imports, suggests or enhances
Complete documentation for ubms
Functions, R codes and Examples using
the ubms R package
Some associated functions: RSR . coef-ubmsFit-method . extract-ubmsFit-method . extract_log_lik . fitList-ubmsFit-method . fitted-ubmsFit-method . getY-ubmsFit-method . get_elapsed_time-ubmsFit-method . get_stancode-ubmsFit-method . gof . kfold-ubmsFit-method . loo-ubmsFit-method . modSel-ubmsFitList-method . names-ubmsFit-method . names-ubmsFitList-method . nsamples-ubmsFit-method . plot-ubmsFit-ANY-method . plot_effects-ubmsFit-method . plot_posteriors-ubmsFit-method . plot_residuals-ubmsFit-method . plot_spatial . posterior_linpred-ubmsFit-method . posterior_predict-ubmsFit-method . predict-ubmsFit-method . priors . projected . ranef-ubmsFit-method . residuals-ubmsFit-method . stan_colext . stan_distsamp . stan_multinomPois . stan_occu . stan_occuRN . stan_occuTTD . stan_pcount . sub-ubmsFit-character-missing-missing-method . sub-ubmsSubmodelList-character-missing-missing-method . summary-ubmsFit-method . traceplot-ubmsFit-method . turnover . ubms . ubmsFitList-extractors . waic-ubmsFit-method .
Some associated R codes: RcppExports.R . colext.R . distsamp.R . fit.R . fitlist.R . fitted.R . gof.R . inputs.R . kfold.R . loglik.R . mb_chisq.R . missing.R . multinomPois.R . occu.R . occuRN.R . occuTTD.R . pcount.R . plot_effects.R . plot_posteriors.R . posterior_linpred.R . posterior_predict.R . predict.R . priors.R . ranef.R . residuals.R . response.R . spatial.R . stanmodels.R . submodel.R . test-helpers.R . ubms-package.R . ubmsFit-methods.R . ubmsFitList-methods.R . umf.R . utils.R . Full ubms package functions and examples
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