Other packages > Find by keyword >

ubiquity  

PKPD, PBPK, and Systems Pharmacology Modeling Tools
View on CRAN: Click here


Download and install ubiquity package within the R console
Install from CRAN:
install.packages("ubiquity")

Install from Github:
library("remotes")
install_github("cran/ubiquity")

Install by package version:
library("remotes")
install_version("ubiquity", "2.1.0")



Attach the package and use:
library("ubiquity")
Maintained by
John Harrold
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-10-17
Latest Update: 2025-01-07
Description:
Complete work flow for the analysis of pharmacokinetic pharmacodynamic (PKPD), physiologically-based pharmacokinetic (PBPK) and systems pharmacology models including: creation of ordinary differential equation-based models, pooled parameter estimation, individual/population based simulations, rule-based simulations for clinical trial design and modeling assays, deployment with a customizable 'Shiny' app, and non-compartmental analysis. System-specific analysis templates can be generated and each element includes integrated reporting with 'PowerPoint' and 'Word'.
How to cite:
John Harrold (2019). ubiquity: PKPD, PBPK, and Systems Pharmacology Modeling Tools. R package version 2.1.0, https://cran.r-project.org/web/packages/ubiquity. Accessed 07 Mar. 2026.
Previous versions and publish date:
1.0.0 (2019-10-17 10:10), 1.0.1 (2020-01-21 08:50), 1.0.2 (2020-07-05 17:00), 1.0.3 (2020-09-13 18:40), 1.0.4 (2021-04-18 06:30), 1.0.5 (2021-04-25 20:50), 2.0.0 (2021-09-03 06:40), 2.0.1 (2023-10-29 21:50), 2.0.3 (2024-03-08 10:10)
Other packages that cited ubiquity R package
View ubiquity citation profile
Other R packages that ubiquity depends, imports, suggests or enhances
Complete documentation for ubiquity
Functions, R codes and Examples using the ubiquity R package
Some associated functions: AUC_Bailers_method . GUI_log_entry . apply_sub_file_COV . archive_estimation . build_system . calculate_halflife . calculate_objective . calculate_objective_ga . calculate_objective_pso . calculate_variance . check_steady_state . compare_estimate . estimate_parameters . fetch_full_parameters . find_bracketed_arguments . generate_parameter . generate_report . generate_subject . gg_axis . gg_log10_xaxis . gg_log10_yaxis . linspace . logspace . make_forcing_function . nm_select_records . pad_string . parse_patterns . prepare_figure . run_simulation_titrate . run_simulation_ubiquity . sample_around . simulate_subjects . solution_statistics . som_to_df . system_check_requirements . system_check_steady_state . system_clear_cohorts . system_define_cohort . system_define_cohorts_nm . system_estimate_parameters . system_fetch_TSsys . system_fetch_guess . system_fetch_iiv . system_fetch_nca . system_fetch_nca_columns . system_fetch_parameters . system_fetch_rpt_officer_object . system_fetch_rpt_onbrand_object . system_fetch_set . system_fetch_template . system_glp_init . system_glp_scenario . system_load_data . system_log_debug_save . system_log_entry . system_log_init . system_nca_parameters_meta . system_nca_run . system_nca_summary . system_new . system_new_list . system_new_tt_rule . system_nm_check_ds . system_od_general . system_plot_cohorts . system_req . system_rpt_add_doc_content . system_rpt_add_slide . system_rpt_estimation . system_rpt_nca . system_rpt_read_template . system_rpt_save_report . system_rpt_template_details . system_select_set . system_set_bolus . system_set_covariate . system_set_guess . system_set_iiv . system_set_option . system_set_parameter . system_set_rate . system_set_rpt_officer_object . system_set_rpt_onbrand_object . system_set_tt_bolus . system_set_tt_cond . system_set_tt_rate . system_simulate_estimation_results . system_ts_to_simtime . system_view . system_zero_inputs . tic . timecourse_stats . toc . ubiquity_name_check . var2string . var2string_gen . vp . workshop_fetch . 
Some associated R codes: Full ubiquity package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

ReviewR  
A Light-Weight, Portable Tool for Reviewing Individual Patient Records
A portable Shiny tool to explore patient-level electronic health record data and perform chart revi ...
Download / Learn more Package Citations See dependency  
SAMtool  
Stock Assessment Methods Toolkit
Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform ...
Download / Learn more Package Citations See dependency  
testDriveR  
Teaching Data for Statistics and Data Science
Provides data sets for teaching statistics and data science courses. It includes a sample of data f ...
Download / Learn more Package Citations See dependency  
lmSubsets  
Exact Variable-Subset Selection in Linear Regression
Exact and approximation algorithms for variable-subset selection in ordinary linear regression mode ...
Download / Learn more Package Citations See dependency  
portalr  
Create Useful Summaries of the Portal Data
Download and generate summaries for the rodent, plant, ant, and weather data from the Portal Projec ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

26,264

R Packages

223,360

Dependencies

70,376

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA