Other packages > Find by keyword >

twl  

Two-Way Latent Structure Clustering Model
View on CRAN: Click here


Download and install twl package within the R console
Install from CRAN:
install.packages("twl")

Install from Github:
library("remotes")
install_github("cran/twl")

Install by package version:
library("remotes")
install_version("twl", "1.0")



Attach the package and use:
library("twl")
Maintained by
Michael Swanson
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-08-24
Latest Update: 2018-08-24
Description:
Implementation of a Bayesian two-way latent structure model for integrative genomic clustering.The model clusters samples in relation to distinct data sources, with each subject-dataset receiving a latent cluster label, though cluster labels have across-dataset meaning because of the model formulation.A common scaling across data sources is unneeded, and inference is obtained by a Gibbs Sampler.The model can fit multivariate Gaussian distributed clusters or a heavier-tailed modification of a Gaussian density.Uniquely among integrative clustering models, the formulation makes no nestedness assumptions of samples across data sources – the user can still fit the model if a study subject only has information from one data source. The package provides a variety of post-processing functions for model examination including ones for quantifying observed alignment of clusterings across genomic data sources.Run time is optimized so that analyses of datasets on the order of thousands of features on fewer than 5 datasets and hundreds of subjects can converge in 1 or 2 days on a single CPU.See "Swanson DM, Lien T, Bergholtz H, Sorlie T, Frigessi A, Investigating Coordinated Architectures Across Clusters in Integrative Studies: a Bayesian Two-Way Latent Structure Model, 2018, <doi:10.1101/387076>, Cold Spring Harbor Laboratory" at <https://www.biorxiv.org/content/early/2018/08/07/387076.full.pdf> for model details.
How to cite:
Michael Swanson (2018). twl: Two-Way Latent Structure Clustering Model. R package version 1.0, https://cran.r-project.org/web/packages/twl. Accessed 20 Jul. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited twl R package
View twl citation profile
Other R packages that twl depends, imports, suggests or enhances
Complete documentation for twl
Functions, R codes and Examples using the twl R package
Some associated functions: TWLsample . clus_save . cross_dat_analy . misaligned . misaligned_mat . outpu_new . pairwise_clus . post_analy_clus . post_analy_cor . twl-package . 
Some associated R codes: dat.R . post_mcmc.R . twl_mod.R .  Full twl package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
iemiscdata  
Irucka Embry's Miscellaneous Data Collection
Miscellaneous data sets [Chemistry, Engineering Economics, Environmental/Water Resources Engineerin ...
Download / Learn more Package Citations See dependency  
metaLik  
Likelihood Inference in Meta-Analysis and Meta-Regression Models
First- and higher-order likelihood inference in meta-analysis and meta-regression models. ...
Download / Learn more Package Citations See dependency  
ecospat  
Spatial Ecology Miscellaneous Methods
Collection of R functions and data sets for the support of spatial ecology analyses with a focus on ...
Download / Learn more Package Citations See dependency  
secsse  
Several Examined and Concealed States-Dependent Speciation and Extinction
Simultaneously infers state-dependent diversification across two or more states of a single or mult ...
Download / Learn more Package Citations See dependency  

27,889

R Packages

239,283

Dependencies

74,019

Author Associations

27,890

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA