Other packages > Find by keyword >

twl  

Two-Way Latent Structure Clustering Model
View on CRAN: Click here


Download and install twl package within the R console
Install from CRAN:
install.packages("twl")

Install from Github:
library("remotes")
install_github("cran/twl")

Install by package version:
library("remotes")
install_version("twl", "1.0")



Attach the package and use:
library("twl")
Maintained by
Michael Swanson
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-08-24
Latest Update: 2018-08-24
Description:
Implementation of a Bayesian two-way latent structure model for integrative genomic clustering.The model clusters samples in relation to distinct data sources, with each subject-dataset receiving a latent cluster label, though cluster labels have across-dataset meaning because of the model formulation.A common scaling across data sources is unneeded, and inference is obtained by a Gibbs Sampler.The model can fit multivariate Gaussian distributed clusters or a heavier-tailed modification of a Gaussian density.Uniquely among integrative clustering models, the formulation makes no nestedness assumptions of samples across data sources – the user can still fit the model if a study subject only has information from one data source. The package provides a variety of post-processing functions for model examination including ones for quantifying observed alignment of clusterings across genomic data sources.Run time is optimized so that analyses of datasets on the order of thousands of features on fewer than 5 datasets and hundreds of subjects can converge in 1 or 2 days on a single CPU.See "Swanson DM, Lien T, Bergholtz H, Sorlie T, Frigessi A, Investigating Coordinated Architectures Across Clusters in Integrative Studies: a Bayesian Two-Way Latent Structure Model, 2018, <doi:10.1101/387076>, Cold Spring Harbor Laboratory" at <https://www.biorxiv.org/content/early/2018/08/07/387076.full.pdf> for model details.
How to cite:
Michael Swanson (2018). twl: Two-Way Latent Structure Clustering Model. R package version 1.0, https://cran.r-project.org/web/packages/twl. Accessed 08 Jun. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited twl R package
View twl citation profile
Other R packages that twl depends, imports, suggests or enhances
Complete documentation for twl
Functions, R codes and Examples using the twl R package
Some associated functions: TWLsample . clus_save . cross_dat_analy . misaligned . misaligned_mat . outpu_new . pairwise_clus . post_analy_clus . post_analy_cor . twl-package . 
Some associated R codes: dat.R . post_mcmc.R . twl_mod.R .  Full twl package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

geofacet  
'ggplot2' Faceting Utilities for Geographical Data
Provides geographical faceting functionality for 'ggplot2'. Geographical faceting arranges a sequen ...
Download / Learn more Package Citations See dependency  
FluMoDL  
Influenza-Attributable Mortality with Distributed-Lag Models
Functions to estimate the mortality attributable to influenza and temperature, using distributed-la ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
AdvBinomApps  
Upper Clopper-Pearson Confidence Limits for Burn-in Studies under Additional Available Information
Functions to compute upper Clopper-Pearson confidence limits of early life failure probabilities and ...
Download / Learn more Package Citations See dependency  
penppml  
Penalized Poisson Pseudo Maximum Likelihood Regression
A set of tools that enables efficient estimation of penalized Poisson Pseudo Maximum Likelihood reg ...
Download / Learn more Package Citations See dependency  
ODMeans  
OD-Means: k-Means for Origin-Destination
OD-means is a hierarchical adaptive k-means algorithm based on origin-destination pairs. In the fir ...
Download / Learn more Package Citations See dependency  

27,372

R Packages

233,548

Dependencies

72,820

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA