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tripsAndDipR  

Identification of 2n and 3n Samples from Amplicon Sequencing Data
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Download and install tripsAndDipR package within the R console
Install from CRAN:
install.packages("tripsAndDipR")

Install from Github:
library("remotes")
install_github("cran/tripsAndDipR")

Install by package version:
library("remotes")
install_version("tripsAndDipR", "0.1.0")



Attach the package and use:
library("tripsAndDipR")
Maintained by
Thomas Delomas
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First Published: 2019-08-28
Latest Update: 2019-08-28
Description:
Uses read counts for biallelic single nucleotide polymorphisms (SNPs) to compare the likelihoods for the observed read counts given that a sample is either diploid or triploid. It allows parameters to be specified to account for sequencing error rates and allelic bias. For details of the algorithm, please see Delomas (2019) <doi:10.1111/1755-0998.13073>.
How to cite:
Thomas Delomas (2019). tripsAndDipR: Identification of 2n and 3n Samples from Amplicon Sequencing Data. R package version 0.1.0, https://cran.r-project.org/web/packages/tripsAndDipR. Accessed 22 Dec. 2024.
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Some associated functions: tripsAndDip . 
Some associated R codes: tripsAndDip.R .  Full tripsAndDipR package functions and examples
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